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07.07.2020

Installing PyMol on Ubuntu

PyMol is a molecular visualization software that is freely available for education-use-only [1]. PyMol provides an interface for the visualization of small and macromolecules. Besides, it provides various other functionalities including format export options such as PDB and poses import and export. It is also most widely used in analyzing the docking output obtained from

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Latest Reviews

Installing PyMol on Ubuntu

July 7, 2020

Molecular Visualization/Software/Tools

PyMol is a molecular visualization software that is freely available for education-use-only [1]. PyMol provides an interface for the visualization of small

Editorial: Bioinformatics Review- A Long Way Ahead

July 4, 2020July 7, 2020

Editorial

Bioinformatics Review is moving forward towards completing its fifth year since 2015. Since then it has grown with the support of our readers

Virtual Screening Methodology for Structure-based Drug Designing

July 3, 2020July 4, 2020

Docking/Drug Discovery/Virtual Screening

Virtual High Throughput Screening (vHTS), also known as Virtual Screening (VS) is one of the essential steps involved in in-silico drug designing.

Homology search against a local dataset using NCBI-BLAST+ command-line tool

July 2, 2020July 3, 2020

Sequence Analysis/Software/Tools

NCBI-BLAST+ [1] command-line tool offers multiple functions to be performed on a large dataset of sequences. Previously, we have shown how to

Installing PyMol on Ubuntu

July 7, 2020

Molecular Visualization/Software/Tools

PyMol is a molecular visualization software that is freely available for education-use-only [1]. PyMol provides an interface for the visualization of small
More
Homology search against a local dataset using NCBI-BLAST+ command-line tool

July 2, 2020July 3, 2020

Sequence Analysis/Software/Tools

NCBI-BLAST+ [1] command-line tool offers multiple functions to be performed on a large dataset of sequences. Previously, we have shown how to
More

Virtual Screening Methodology for Structure-based Drug Designing

July 3, 2020July 4, 2020

Docking/Drug Discovery/Virtual Screening

Virtual High Throughput Screening (vHTS), also known as Virtual Screening (VS) is one of the essential steps involved in in-silico drug designing.

Video Tutorial: Virtual Screening using Autodock Vina

June 25, 2020June 25, 2020

Docking/Virtual Screening

This is a video tutorial of our existing article.

How to search motif pattern in FASTA sequences using Perl hash?

September 15, 2019May 20, 2020

Algorithms/Bioinformatics Programming/Perl

Here is a simple Perl script to search for motif patterns in a large FASTA file with multiple sequences.
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How to read fasta sequences from a file using PHP?

May 22, 2019May 20, 2020

Algorithms/Bioinformatics Programming/Fasta

Here is a simple function in PHP to read fasta sequences from a file.
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How to read fasta sequences as hash using perl?

March 16, 2019May 20, 2020

Algorithms/Bioinformatics Programming/Perl

This is a simple Perl script to read a multifasta file as a hash.
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BETSY: A new backward-chaining expert system for automated development of pipelines in Bioinformatics

November 19, 2018May 20, 2020

Algorithms/Bioinformatics Programming/Software

Bioinformatics analyses have become long and difficult as it involves a large number of steps implemented for data processing. Bioinformatics pipelines are
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Programming

Modifying multi-FASTA files using Bash: ‘Sed’ Command

June 30, 2020

Bioinformatics Programming

Dealing with thousands of FASTA sequences is a tedious task without using bioinformatics programming. It eases multiple minute tasks to be performed
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Perl script to find duplicate FASTA sequences using their header?

June 29, 2020

Bioinformatics Programming

In a large file of FASTA sequences, it is nearly impossible to perform some operations manually. This is a simple Perl script
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How to perform graph-based clustering of peptide/protein sequences using MCL?

June 20, 2020June 22, 2020

Bioinformatics Programming/Software/Tools

Markov Cluster Algorithm (MCL) is a clustering algorithm that clusters networks [1]. One of its applications is in clustering protein or peptide
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How to concatenate FASTA sequences using Perl?

January 27, 2020May 20, 2020

Bioinformatics Programming/Perl

Here is a simple Perl script to concatenate multiline FASTA sequences into a single line. A similar Perl script has been provided
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