Kpax is a bioinformatics program to search and align protein structures [1]. It is currently available for Linux platforms only. In this article, we are going...
SMINA is a fork of AutoDock Vina supporting better scoring function and high-performance energy minimization [1]. In this article, we are going to install SMINA on...
In this article, we are providing a few commands that are used to commit changes to GitHub repositories using VS code terminal.
Previously, we have provided a tutorial on using dssp_parser to extract all helices including long and short separately. Now, we have provided a new python script...
The x, y, and z coordinates of atoms are provided in the PDB file. One way to extract them is by using the Biopython package [1]....
MANE is a collaborative project between NCBI and EMBL-EBI. It stands for Matched Annotation from NCBI and EMBL-EBI [1]. The datasets provided by NCBI and EMBL-EBI...
Drug-drug interaction (DDI) prediction is gaining much more interest in the drug development process and disease diagnosis. Recently, a novel algorithm is proposed based on convolutional...
Previously, we provided a tutorial for Pymol installation on Ubuntu. In this article, we are going to install Pymol on Mac OS.
It is not an easy task to retrieve names of small molecules associated with a certain disease. A new web-based application is developed to retrieve a...
It is important to see the behavior of protein during an MD simulation. This can be achieved by taking snapshots in the form of PDB format....
A new software called GENPPI [1] is developed to create protein interaction networks from genomes.
Previously, we have provided a tutorial on saving good-quality images using Pymol GUI. In this article, we are going to save high-resolution images using the Pymol...
Snakemake is a workflow management system to create scalable data analyses [1]. Workflows are defined in Python-based language. In this article, we are going to install...
HMMER [1] is a well-known bioinformatics tool/software. It offers a web server and a command-line tool for users. Here are some additional applications of HMMER.
Modeller is a standalone tool for homology modeling or comparative modeling of proteins 3D structures [1-4]. In this article, we are discussing its different uses and...
Autodock-Vina-develop [1,2] package offers some extra features in addition to Autodock Vina. It includes AutoDock 4.2 and Vina scoring functions, a batch mode for virtual screening...
Circular RNAs serve as markers for diagnosis and therapeutic targets of several diseases such as cardiovascular diseases, cancer, and autoimmune diseases. New software is developed for...
A new toolkit called CoolBox is developed for the visual analysis of genomic data [1]. It makes it easy to visualize patterns in a large-scale genomic...
Autodock Vina [1] is one of the most widely used bioinformatics software for computational docking. For beginners and those who are new to the field of...
An automated workflow for single nucleotide polymorphisms detection is developed. This is known as OVarFlow [1]. This workflow also helps in the identification of insertions and...
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