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Installing Gromacs on Ubuntu for MD Simulation

in Softwares/Tools by

In bioinformatics, GROMACS is one of the most popular Molecular Dynamics simulation software with a load of features built in. Installing GROMACS Version 5.x.x+ can be a tedious and cumbersome process on Ubuntu, especially if you are just starting out. Continue reading “Installing Gromacs on Ubuntu for MD Simulation” »

IBS: Modifying the organization of biological sequences diagramatically

in Sequence Analysis/Softwares by

Many a times, we need to visualize and summarize the existing information of the biological sequences like protein or DNA. For this purpose, a new software package has been introduced called ILLUSTRATOR Of BIOLOGICAL SEQUENCE (IBS) which is used for representing the organization of protein or nucleotide sequences in an easy, efficient and precise manner. Continue reading “IBS: Modifying the organization of biological sequences diagramatically” »

Structural Identification of Macromolecules in solution with DARA web server

in Algorithms/Bioinformatics News/Softwares by

To study macromolecules in homogenous solution, a technique known as SAXS ( Small Angle X-ray Scattering) is used where the obtained scattering patterns are used to design the structure of macromolecules that are proteins, mucleic acids and protein:nucleic acid complexes. Continue reading “Structural Identification of Macromolecules in solution with DARA web server” »

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