How to know binding pocket of a predicted structure of a protein for VS?

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Bioinformatics Review Reader Staff asked 3 weeks ago

I have predicted a protein structure using SwissModel but I don’t know its binding sites. The structure is not available in PDB. How can I predict binding sites for virtual screening?

Thanks in advance!

1 Answers
Muniba Faiza Staff answered 3 weeks ago

Hi,
You can predict binding sites using the CASTp server and any other prediction server. You can use this predicted site to define a grid box for docking/virtual screening.

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