How to generate config file for docking using Autodock Tools?
How to install Autodock on Ubuntu (Linux) with CUDA GPU support?
Autodock Vina: Uses & Applications
How to perform virtual screening using Pyrx?
How to perform metal ion-protein docking using idock?
GROMACS: Uses & Applications
Easy installation of GROMACS on Ubuntu 18.04 & 20.04
How to create an index file in GROMACS for MD simulation?
How to generate topology of small molecules & ligands for MD Simulation?
Tutorial: MD Simulation of small organic molecules using GROMACS
I-TASSER: Uses & Applications
CoolBox- An open-source toolkit for genomic data visualization
Easy installation of some alignment software on Ubuntu (Linux) 18.04 & 20.04
FEGS- A New Feature Extraction Model for Protein Sequence Analysis
Installing RDPTools on Ubuntu (Linux)
NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences
How to install ClustalW2 on Ubuntu?
MOCCA- A New Suite to Model cis- regulatory Elements for Motif Occurrence Combinatorics
vs_Analysis.py: A Python Script to Analyze Virtual Screening Results of Autodock Vina
How to search motif pattern in FASTA sequences using Perl hash?
How to read fasta sequences from a file using PHP?
How to read fasta sequences as hash using perl?
sminalog_analysis.py – A new Python script to fetch top binding affinities from SMINA log file
Installing Pycharm on Ubuntu (Linux)
How to execute Unix/shell commands in PHP?
How to search for a specific character in a file using Python?
This Month in Bioinformatics- Research Updates of June 2021
This Month in Bioinformatics- Research Updates of May 2021
This Month in Bioinformatics- Research Updates of April 2021
This Month in Bioinformatics- Research Updates of March 2021
This Month in Bioinformatics- Research Updates of February 2021
Most widely used tools for drug-drug interaction prediction
How to download small molecules from ZINC database for virtual screening?
Prepare receptor and ligand files for docking using Python scripts
Virtual Screening Methodology for Structure-based Drug Designing
Beginner’s Guide for Docking using Autodock Vina
Installing TREE-PUZZLE on Ubuntu
Tutorial: Constructing phylogenetic tree using MEGA7
Update: A multi-epitope in silico vaccine candidate designed for Covid-19
Phylogenetics analysis of SARS-CoV-2 spike glycoproteins
Installing and executing ProtTest3 on Ubuntu
Homology Modeling vs ab initio Protein Structure Prediction
Tutorial: Basic protein structure modeling using MODELLER
Methodology for Homology Modeling of a Simple Protein
How to install DeepView-Swiss PDB Viewer on Linux?
How to make an impactful science presentation?
Basic bioinformatics concepts to learn for beginners
A Beginner’s Guide on How to Write Good Manuscripts
How to remove HETATMS and chains from PDB file?
Importance of Reasoning in Research
BLAST+ 2.12.0- A more efficient version of BLAST is available
Tutorial: Vina Output Analysis Using PyMol
Video Tutorial: Autodock Vina Result Analysis with PyMol
Genome editing of human embryos using CRISPR/Cas9- crossing the ethics of gene editing?
How to perform docking in a specific binding site using AutoDock Vina?
BiR: Impact report – July 2016 & More
VISPR- A new tool to visualize CRISPR screening experiments
How to install Cortex on Ubuntu?
How to Compress and Decompress FASTQ, SAM/BAM & VCF Files using genozip?
Installing BCFtools on Ubuntu
GROMACS [1] offers a vast range of functions when it comes to molecular dynamics simulation. Today, we are going to...
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