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How to extract fasta sequences from a multi-fasta file based on matching headers in a separate file?

in Bioinformatics Programming by

This is a simple Perl script to extract FASTA sequences from a large fasta file depending on the matching fasta headers present in another file. Continue reading “How to extract fasta sequences from a multi-fasta file based on matching headers in a separate file?” »

How to read fasta sequences as hash using perl?

in Algorithms/Bioinformatics Programming/Perl by

This is a simple Perl script to read a multifasta¬†file as a hash. Continue reading “How to read fasta sequences as hash using perl?” »

BETSY: A new backward-chaining expert system for automated development of pipelines in Bioinformatics

in Algorithms/Bioinformatics Programming/Softwares by

Bioinformatics analyses have become long and difficult as it involves a large number of steps implemented for data processing. Bioinformatics pipelines are developed to make this process easier, which on one hand automate a specific analysis, while on the other hand, are still limited for investigative analyses requiring changes to the parameters used in the process. Continue reading “BETSY: A new backward-chaining expert system for automated development of pipelines in Bioinformatics” »

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