Common mistakes made during computational docking.
Computational docking is not a trivial task once we avoid making some…
vs_analysis_compound.py: Python script to search for binding affinities based on compound names.
Previously, we have provided the vs_analysis.py script to analyze virtual screening (VS)…
Installing SMINA on Ubuntu (Linux).
SMINA is a fork of AutoDock Vina supporting better scoring function and…
How to sort binding affinities based on a cutoff using vs_analysis.py script?
Previously, we have provided a Python script (vs_analysis.py) to analyze the virtual…
![[Tutorial] How to install Autodock Vina on MacOS?](https://img.bioinformaticsreview.com/uploads/2022/01/01165858/adv-mac.jpg)
[Tutorial] How to install Autodock Vina on Mac OS?
We have provided several articles on Vina installation on Ubuntu including video…
Virtual Screening using Autodock Vina: Frequently Asked Questions & Answers for Starters
Virtual Screening (VS) is one of the important techniques in bioinformatics. It…
![[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?](https://bioinformaticsreview.com/wp-content/uploads/2021/10/zn.jpg)
[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?
Proteins containing zinc atoms are docked in a different way than that…
![[Tutorial] Installing Autodock-Vina-develop package on Ubuntu.](https://bioinformaticsreview.com/wp-content/uploads/2021/10/adv-dev.jpg)
[Tutorial] Installing Autodock-Vina-develop package on Ubuntu.
Autodock-Vina-develop package offers some extra features in addition to Autodock Vina. It…
Autodock Vina: Uses & Applications
Autodock Vina is one of the most widely used bioinformatics software for…
Installing Raccoon2 plugin on Windows.
We have previously provided an article on the installation of the Raccoon2…
sminalog_analysis.py – A new Python script to fetch top binding affinities from SMINA log file
In one of our previous posts, we provided a Python script for…
Video Tutorial: How to use vs_analysis Python script for virtual screening result analysis of Autodock Vina?
This is a demonstration video of our previously mentioned Python script (vs_analysis.py)…
vs_Analysis.py: A Python Script to Analyze Virtual Screening Results of Autodock Vina
The output files obtained as a result of virtual screening (VS) using…
What is Virtual Screening in Bioinformatics?
If you are a beginner in the field of bioinformatics, you must…
What does the coordinates mean in docking?
Researchers working in the field of bioinformatics are well-aware of the word…
How to perform Flexible Docking using Autodock Vina?
Flexible docking is when some residues in the interacting bodies (receptor and…
Tutorial: Installing Autodock Vina on Windows
We have provided several tutorials on Autodock Vina software including its installation…
Prepare receptor and ligand files for docking using Python scripts
Docking software such as Autodock4 and Autodock Vina require input receptor and…
Video Tutorial: Virtual Screening using Autodock Vina
This is a video tutorial of our existing article.
How to perform virtual screening using Autodock Vina?
Virtual screening is used to identify small molecules that are most likely…