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India ranks 4th among the Top 20 Bioinformatics Database Contributors in the world

in Bioinformatics News by

Database Commons (a catalog of biological databases) [1] has revealed new statistics based on database rankings showing the top 20 countries/regions with the highest number of databases managed by them (Fig. 1). India holds the fourth rank among these top 20 countries with 318 total number of databases. Continue reading “India ranks 4th among the Top 20 Bioinformatics Database Contributors in the world” »

How to get super-computing facilities for Bioinformatics analyses?

in Bioinformatics News by

It is a big trouble to run molecular simulations and docking for large molecules without having any proper supercomputing facilities as they require more memory and time to finish.¬† Continue reading “How to get super-computing facilities for Bioinformatics analyses?” »

A new high-level Python interface for MD simulation using GROMACS

in Algorithms/Bioinformatics News/Molecular dynamics/Softwares/Tools by

The roots of the molecular simulation application can be traced back to physics where it was applied to simplified hard-sphere systems [1]. This field of molecular simulation study has gained a lot of interest since then and applied to perform simulations to fold small protein at multi-microsecond scale [2-4], predict functional properties of receptors and to capture the intermediate¬†transitions of the complex [5], and to study the movement and behavior of ligand in a binding pocket and also to predict interactions between receptors and ligands [6,7]. Continue reading “A new high-level Python interface for MD simulation using GROMACS” »

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