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Tariq Abdullah

Tariq Abdullah has 22 articles published.

How to extract fasta sequences from a multi-fasta file based on matching headers in a separate file?

in Bioinformatics Programming by

This is a simple Perl script to extract FASTA sequences from a large fasta file depending on the matching fasta headers present in another file. Continue reading “How to extract fasta sequences from a multi-fasta file based on matching headers in a separate file?” »

How to read fasta sequences as hash using perl?

in Algorithms/Bioinformatics Programming/Perl by

This is a simple Perl script to read a multifasta¬†file as a hash. Continue reading “How to read fasta sequences as hash using perl?” »

How to create a pangenome of isolated genome sequences using Roary and Prokka?

in Softwares/Tools by

Roary is a pangenome genome pipeline, which calculates pangenome of a set of related prokaryotic isolates [1]. It takes annotated assemblies in the gff3 format generated by Prokka [2] and provides the pangenome. The working methodology has been explained in our previous article. In this article, we will learn how to create the pangenome of a few isolated genome sequences using Roary [1] and Prokka [2]. Continue reading “How to create a pangenome of isolated genome sequences using Roary and Prokka?” »

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