MODELLER is a software package that is used to predict protein three-dimensional structures [1,2]. MODELLER can be used for other tasks such as modeling of loops...
Here is a simple function in PHP to read fasta sequences from a file.
Department of Biotechnology (DBT), India is organizing a 5-day workshop on “CRISPR/Cas mediated genome editing in plants: Applications, tools, and experimental design” to address the strategies and...
This is a simple Perl script to extract FASTA sequences from a large fasta file depending on the matching fasta headers present in another file.
This is a simple Perl script to read a multifasta file as a hash.
Roary is a pangenome genome pipeline, which calculates pangenome of a set of related prokaryotic isolates [1]. It takes annotated assemblies in the gff3 format generated...
Database Commons (a catalog of biological databases) [1] has revealed new statistics based on database rankings showing the top 20 countries/regions with the highest number of...
The analysis of Autodock Vina [1] results is a bit tricky in the sense of viewing all interactions and selecting the best pose. In our last...
In the previous article, a new plugin called ‘Raccoon’ was mentioned, which helps in preparing virtual screening using Autodock. It provides a simple graphical user interface...
T-cells, also known as T-lymphocytes, play important role in the cell-mediated immune system. T-cells consist of a T-cell receptor (TCR) at their surface which recognizes the...
It is a big trouble to run molecular simulations and docking for large molecules without having any proper supercomputing facilities as they require more memory and...
As mentioned in the previous article, Micro RNAs (miRNAs) are the short endogenous RNAs (~22 nucleotides) and originate from the non-coding RNAs [1], produced in single-celled eukaryotes,...
Protein-protein interactions are considered necessary in interactome analysis as they play an important in various biological processes such as post-translational modifications and signal transduction, and short...
The roots of the molecular simulation application can be traced back to physics where it was applied to simplified hard-sphere systems [1]. This field of molecular...
BioPerl is a collection of Perl modules that are used to write Perl scripts applied in bioinformatics [1]. It is used in bioinformatics programmings such as...
CRISPR/Cas9 system is a recently developed multi-purpose technology for genome editing [1,2] and its tool CRISPR-ERA/Cas9 is widely used as explained in the previous article [3]....
I-Tasser stands for the iterative threading assembly refinement is a well-known tool for ab-initio structure modeling of proteins [1]. It uses secondary-structure enhanced profile-profile threading alignment...
Intrinsically unstructured proteins (IUPs) are the natively unfolded proteins which must be unfolded or disordered in order to perform their functions. They are commonly referred to...
If you find yourself in a laboratory full of people with scientific temperament, it can be exciting, awesome and hilarious. You may experience a real life “big...
As we improve the quality of articles and as we are nearing our first collective birthday, Bioinformatics Review has expanded its reach, opening new avenues. The...
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