A new assembler called SAUTE is developed for sequence assembly that is based on target enrichment [1].
Mitochondrial-toxicity-related molecules lead to damaging effects on mitochondria and cause severe side effects. To keep track of such molecules a new database is created.
We have previously provided an article on the installation of the Raccoon2 plugin on Ubuntu. In this article, we are going to install Raccoon2 [1] on...
PatchDock is a docking algorithm that is based on the shape complementarity principle [1,2]. It performs molecular docking of any two types of molecules including proteins,...
miRNAs play a significant role in regulating the function of target genes along with a close relation to a variety of diseases such as cancer. A...
As CRISPR/Cas9 is a well-known genome editing technology, it is important to explore and analyze CRISPR screening experiments. In this article, we discuss a new tool...
In this article, we discuss a new tool that is developed for RNA-Seq data analysis. A new tool called RNAdetector [1] is developed for RNA-Seq data...
We have provided several articles on GROMACS [1] installation on Ubuntu including the easy installation method for GROMACS version 5.x.x. In this article, we will provide...
In one of our previous posts, we provided a Python script for the virtual screening analysis of Autodock Vina. This script analyzes all log files obtained...
Protein sequence analyses include protein similarity, Protein function prediction, protein interactions, and so on. A new feature extraction model is developed for easy analysis of protein...
Anaconda is an open-source toolkit that is useful in programming and machine learning using Python/R [1]. In this article, we are going to install Anaconda3 on...
IPD2.0 [1] is an updated version of the Infectious Pathogen Detector (IPD) [2]. It helps in deriving insights from the SARS-CoV-2 genome.
Pycharm [1] is an integrated development environment (IDE) for developers. It combines Python developer tools and provides an easy graphical user interface. In this article, we...
cis-regulatory elements are DNA sequence segments that regulate gene expression. cis-regulatory elements consist of some regions such as promoters, enhancers, and so on. These regions consist...
TANTIGEN is an online database of T-cell epitopes and HLA ligands [1]. A new version of TANTIGEN is introduced this month, known as TANTIGEN 2.0. In...
In this article, we summarize the most widely used tools (online/ standalone) for transcription binding site prediction in DNA sequences.
In one of our previous articles, we explained the basic methodology involved in the homology modeling of a protein. In this article, we are going to...
SAMtools is a software package for high-throughput sequencing data analysis [1]. It consists of three separate packages: SAMtools, BCFtools, and HTSlib. We are going to install...
We all are aware of the covid-19 pandemic since last year it spread worldwide. New information is being published regularly regarding SARS-CoV-2. Recently, a comparative study...
Visualization of running alignments of reads and contigs facilitates easy analysis and is useful in presenting assembly results. Several tools such as Artemis, BLAST Web, Circos,...
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