Software

A collection of published articles on different bioinformatics software.

How to install ClustalW2 on Ubuntu?

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Clustal packages [1,2] are quite useful in multiple sequence alignments. Especially, when you need specific outputs from the command-line. In this article, we will install CustalW2 command-line tool on Ubuntu. Keep Reading

Tutorial-II: Functional Divergence Analysis using DIVERGE 3.0 software

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This is a continuation article of our previous post: Tutorial-I: Functional Divergence Analysis using DIVERGE 3.0 software. In our last tutorial, we explained Type-II functional divergence. In this article, we will explain the rest of the evolutionary analysis using DIVERGE 3.0 software [1]. Keep Reading

Tutorial-I: Functional Divergence Analysis using DIVERGE 3.0 software

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DIVERGE is a tool to detect functional divergence between member genes of a protein family based on (site-specific) shifted evolutionary rates after gene duplication or speciation [1]. Since this tool contains several steps and offers a lot to discover, therefore, we are going to split its tutorial into parts. In this article, we will perform some initial steps in this software and will explain their significance. Keep Reading

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