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Installing Roary and Prokka on Ubuntu

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In the last article on Bioinformatics Review, the utilization of Roary [1] and Prokka [2] was explained to create a pangenome from isolated genome sequences. This article is about installing these both packages on Ubuntu. Continue reading “Installing Roary and Prokka on Ubuntu” »

How to create a pangenome of isolated genome sequences using Roary and Prokka?

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Roary is a pangenome genome pipeline, which calculates pangenome of a set of related prokaryotic isolates [1]. It takes annotated assemblies in the gff3 format generated by Prokka [2] and provides the pangenome. The working methodology has been explained in our previous article. In this article, we will learn how to create the pangenome of a few isolated genome sequences using Roary [1] and Prokka [2]. Continue reading “How to create a pangenome of isolated genome sequences using Roary and Prokka?” »

How to do molecular orbital analysis to find d-orbitals involved in bonding in an organometallic compound?

in Cheminformatics/Softwares/Tools by

Structure modeling of chemical compounds finds essential application in the field of cheminformatics. It is used to study the structural stability, metal-ion bonding, the presence of electrons, closed and open shell energies, the reactivity of complexes, molecular orbital analyzes, molecular mechanics, and so on. There is some software available for structural modeling of chemical compounds/complexes and the most widely used are Gaussian [1] and ORCA [2]. Continue reading “How to do molecular orbital analysis to find d-orbitals involved in bonding in an organometallic compound?” »

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