Software - Page 3

A collection of published articles on different bioinformatics software.

RNAIndel: A tool to identify somatic indels from tumor RNA-seq data


It is a challenging task to discover somatic coding indels that are generated during the preparation of the PCR-based RNA-seq library. A new tool called RNAIndel [1] has been developed for this purpose. Keep Reading

Differential Gene Expression Analysis of RNA-Seq data using MeV


Differential gene expression analysis helps in discovering quantitative changes in the expression levels between the experimental groups. For that, statistical testing is done using various software. In this article, we will analyze RNA seq count data using the edgeR module present in the Multiple Experiment Viewer (MeV) [1,2]. Keep Reading

Installing CRISPRCasFinder on Ubuntu


CRISPR/Cas9 is a genome editing technology trending fastly. It is used to identify CRISPR associated genes within the genomes of prokaryotic bacterias. Several tools are available for this. Amongst them, CRISPRCasFinder is one that is used to search for CRISPRs and Cas genes in sequence data [1]. In this article, we will install CRISPRCasFinder on Ubuntu. Keep Reading

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