We have previously provided an article on the installation of the Raccoon2 plugin on Ubuntu. In this article, we are going to install Raccoon2 [1] on...
PatchDock is a docking algorithm that is based on the shape complementarity principle [1,2]. It performs molecular docking of any two types of molecules including proteins,...
Pyrx [1] is a virtual screening software that allows the docking of multiple ligands with a target protein. Previously, we provided an article on the installation...
There are commonly used alignment programs such as muscle, blast, clustalx, and so on, that can be easily installed from the repository. In this article, we...
CDK stands for chemistry development kit [1]. This is an open source kit for cheminformatics consisting of modular JAVA libraries. In this article, we will install...
As CRISPR/Cas9 is a well-known genome editing technology, it is important to explore and analyze CRISPR screening experiments. In this article, we discuss a new tool...
In this article, we discuss a new tool that is developed for RNA-Seq data analysis. A new tool called RNAdetector [1] is developed for RNA-Seq data...
We have provided several articles on GROMACS [1] installation on Ubuntu including the easy installation method for GROMACS version 5.x.x. In this article, we will provide...
Protein sequence analyses include protein similarity, Protein function prediction, protein interactions, and so on. A new feature extraction model is developed for easy analysis of protein...
sdsorter is a tool that helps in the easy manipulation of SDF files. It takes a single file as input and also provides a single output...
Anaconda is an open-source toolkit that is useful in programming and machine learning using Python/R [1]. In this article, we are going to install Anaconda3 on...
Docking and simulation are two of the methods that are most widely used in bioinformatics. In this article, we provide all important links to the software...
IPD2.0 [1] is an updated version of the Infectious Pathogen Detector (IPD) [2]. It helps in deriving insights from the SARS-CoV-2 genome.
Pycharm [1] is an integrated development environment (IDE) for developers. It combines Python developer tools and provides an easy graphical user interface. In this article, we...
RDP provides analysis tools called RDPTools. These tools are used to high-throughput sequencing data including single-strand, and paired-end reads [1]. In this article, we are going...
cis-regulatory elements are DNA sequence segments that regulate gene expression. cis-regulatory elements consist of some regions such as promoters, enhancers, and so on. These regions consist...
In this article, we are going to install some basic bioinformatics tools on Ubuntu from the repository. These tools include BLAST, HMMER, MUSCLE, MAFFT, several NGS...
Drug-drug interaction is an important method in bioinformatics, especially in the case of treatment of serious diseases such as cancer. It tells us about the drug...
In this article, we summarize the most widely used tools (online/ standalone) for transcription binding site prediction in DNA sequences.
A new bioinformatics tool called “EzMAP” is developed for the easy analysis of the microbiome [1]. EzMAP stands for an easy microbiome analysis platform.
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