How to predict binding pocket/site using CASTp server?
The CASTp server allows you to predict the binding sites in a…
Video Tutorial: Calculating binding pocket volume using PyVol plugin.
This is a video tutorial for calculating binding pocket volume using the…
Protein structure & folding information exploited from remote homologs.
Remote homologs are similar protein structures that share similar functions, but there…
How to generate electron density map using Pymol?
Electron density maps are available for most of the protein structures in…
How to install Kpax on Ubuntu (Linux)?
Kpax is a bioinformatics program to search and align protein structures .…
How to run do_dssp command (mkdssp) in Gromacs 2022?
In the latest version of GROMACS (2022) , there are some issues…
Extracting first and last residue from helix file in DSSP format.
Previously, we have provided a tutorial on using dssp_parser to extract all…
SWISS-MODEL: Uses & Applications
SWISS-MODEL is a bioinformatics tool that is widely used for protein structure…
I-TASSER: Uses & Applications
I-TASSER is another most widely used bioinformatics software. It is used for…
Homology Modeling vs ab initio Protein Structure Prediction
In one of our previous articles, we explained the basic methodology involved…
Tutorial: Basic protein structure modeling using MODELLER
SALI MODELLER is one of the most widely used command-line bioinformatics software…
Methodology for Homology Modeling of a Simple Protein
Previously, we have explained the initial methods involved in the structure prediction…
How to install DeepView-Swiss PDB Viewer on Linux?
DeepView (Swiss-PDB Viewer) is used to analyze multiple proteins simultaneously. Protein structure…
Homology Modeling of α-Glucosidase Enzyme: 3D Structure Prediction
The word "Homology modeling", means comparative modeling or sometimes it is known…
Biotite: A bioinformatics framework for sequence and structure data analysis
Sequence and structural data in bioinformatics are ever-increasing and the need for…
ab-initio prediction of protein structure: An introduction
We have heard a lot about the ab-initio term in Bioinformatics, which…
How to perform protein structure modeling using I-Tasser stand-alone tool?
I-Tasser stands for the iterative threading assembly refinement is a well-known tool…
Structural analysis of FOXL2 gene and its role in kidney failure
FOXL2 gene codes for a protein belonging to the fork-head- winged helix…
