Protein-ligand complex simulation

Tutorial: MD simulation output analysis of a complex using GROMACS


We have provided several tutorials on molecular dynamics (MD) simulation (please check further reading section). They include installation of simulation software, simulation of a simple protein, and a complex. In this article, we will analyze the GROMACS [1] output of MD simulation of a complex. Keep Reading

Tutorial: MD Simulation of a Protein-Ligand Complex using GROMACS


Previously, we have provided a tutorial on molecular dynamics (MD) simulation of a protein using GROMACS [1] and its result analysis [2]. In this article, we will perform MD simulation for a protein-ligand complex using GROMACS [3, 4]. Keep Reading

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