Virtual Screening using Autodock Vina: Frequently Asked Questions & Answers for Starters
[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?
How to generate config file for docking using Autodock Tools?
How to install Autodock on Ubuntu (Linux) with CUDA GPU support?
Autodock Vina: Uses & Applications
How to take snapshots of structure at specific times in GROMACS?
GROMACS: Uses & Applications
Easy installation of GROMACS on Ubuntu 18.04 & 20.04
How to create an index file in GROMACS for MD simulation?
How to generate topology of small molecules & ligands for MD Simulation?
[Tutorial] How to install Autodock Vina on Mac OS?
GENPPI- Tool to create protein interaction networks from genomes.
SWISS-MODEL: Uses & Applications
How to save high resolution images in Pymol using command line?
How to find a best fit model using IQ-TREE?
HMMER- Uses & Applications
Easy installation of some alignment software on Ubuntu (Linux) 18.04 & 20.04
FEGS- A New Feature Extraction Model for Protein Sequence Analysis
Installing RDPTools on Ubuntu (Linux)
NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences
MOCCA- A New Suite to Model cis- regulatory Elements for Motif Occurrence Combinatorics
vs_Analysis.py: A Python Script to Analyze Virtual Screening Results of Autodock Vina
How to search motif pattern in FASTA sequences using Perl hash?
How to read fasta sequences from a file using PHP?
How to read fasta sequences as hash using perl?
sminalog_analysis.py – A new Python script to fetch top binding affinities from SMINA log file
Installing Pycharm on Ubuntu (Linux)
How to execute Unix/shell commands in PHP?
How to search for a specific character in a file using Python?
This month in Bioinformatics- Research Updates of November 2021
This Month in Bioinformatics- Research Updates of October 2021
This Month in Bioinformatics- Research Updates of June 2021
This Month in Bioinformatics- Research Updates of May 2021
This Month in Bioinformatics- Research Updates of April 2021
Most widely used tools for drug-drug interaction prediction
How to download small molecules from ZINC database for virtual screening?
Prepare receptor and ligand files for docking using Python scripts
Virtual Screening Methodology for Structure-based Drug Designing
Beginner’s Guide for Docking using Autodock Vina
Installing TREE-PUZZLE on Ubuntu
Tutorial: Constructing phylogenetic tree using MEGA7
Update: A multi-epitope in silico vaccine candidate designed for Covid-19
Phylogenetics analysis of SARS-CoV-2 spike glycoproteins
I-TASSER: Uses & Applications
Homology Modeling vs ab initio Protein Structure Prediction
Tutorial: Basic protein structure modeling using MODELLER
Methodology for Homology Modeling of a Simple Protein
How to make an impactful science presentation?
Basic bioinformatics concepts to learn for beginners
A Beginner’s Guide on How to Write Good Manuscripts
How to remove HETATMS and chains from PDB file?
Importance of Reasoning in Research
BLAST+ 2.12.0- A more efficient version of BLAST is available
Tutorial: Vina Output Analysis Using PyMol
Video Tutorial: Autodock Vina Result Analysis with PyMol
Genome editing of human embryos using CRISPR/Cas9- crossing the ethics of gene editing?
How to perform docking in a specific binding site using AutoDock Vina?
BiR: Impact report – July 2016 & More
CoolBox- An open-source toolkit for genomic data visualization
VISPR- A new tool to visualize CRISPR screening experiments
How to install Cortex on Ubuntu?
How to Compress and Decompress FASTQ, SAM/BAM & VCF Files using genozip?
Installing BCFtools on Ubuntu
In this article, we summarize the most widely used tools (online/ standalone) for transcription binding site prediction in DNA sequences.