Tools

A collection of articles explaining installation and usage of different bioinformatics tools.

AligNet- A New Protein-Protein Interaction Network Aligner

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Protein-protein interactions (PPIs) are essential to study to understand the molecular functions carried out by a group of proteins. Alcala et al., [1] developed a new aligner software to provide biologically relevant alignments of PPI networks. Keep Reading

Installing FASTX-toolkit on Ubuntu

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FASTX-toolkit is a command-line bioinformatics software package for the preprocessing of short reads FASTQ/A files [1]. These files contain multiple short-read sequences obtained as an output of next-generation sequencing. In this article, we are going to install FASTX-toolkit on Ubuntu. Keep Reading

Installing SIFT for Missense Variants on Ubuntu

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SIFT is a bioinformatics tool for predicting missense effects of non-synonymous/missense variations in sequences [1]. SIFT identifies naturally occurring nonsynonymous polymorphisms as well as laboratory-induced missense mutations. In this article, we will install SIFT 6.2.1 for missense variants prediction on Ubuntu. Keep Reading

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