How to see ligand interactions and label residues in DS Visualizer?
Discovery Studio (DS) Visualizer is a powerful molecular modeling tool widely used…
[Tutorial] How to install openbabel on Ubuntu (Linux)?
Open Babel is an open-source chemical toolbox for molecular modeling and cheminformatics…
How to Fix Broken Vina Docked Output in DS Visualizer: A Step-by-Step Guide
Molecular docking is a crucial method in computational drug discovery, allowing researchers…
How to install & execute Discovery Studio Visualizer on Ubuntu (Linux)?
DS Visualizer is a comprehensive, free molecular modeling and visualization tool designed…
![[Tutorial] Installing HTSlib on Ubuntu (Linux).](https://img.bioinformaticsreview.com/uploads/2024/08/03204655/htslib.jpg)
[Tutorial] Installing HTSlib on Ubuntu (Linux).
HTSlib is an open-source C library designed for handling high-throughput sequencing (HTS)…
List of widely used MD Simulation Analysis Tools.
Molecular Dynamics (MD) simulation analysis involves interpreting the vast amounts of data…
[Tutorial] Installing ProteStAr on Ubuntu (Linux).
ProteStAr is a bioinformatics tool to compress protein structure files . It…
[Tutorial] How to install 3Dmapper on Ubuntu (Linux)?
Understanding the relationship between genes and proteins is crucial for elucidating biological…
CMake installation and upgrade: What worked & what didn’t?!
CMake is a widely used cross-platform build system that automates the process…
Free_Energy_Landscape-MD: Python package to create Free Energy Landscape using PCA from GROMACS.
In molecular dynamics (MD) simulations, a free energy landscape (FEL) serves as…
VS_Analysis: A Python package to perform post-virtual screening analysis
Virtual screening (VS) is a crucial aspect of bioinformatics. As you may…
vs_interaction_analysis.py: Python script to perform post-virtual screening analysis
Analyzing the results of virtual screening (VS) performed with Autodock Vina can…
How to install Interactive Genome Viewer (IGV) & tools on Ubuntu?
Interactive Genome Viewer (IGV) is an interactive tool to visualize genomic data…
![[Tutorial] Installing VIAMD on Ubuntu (Linux).](https://img.bioinformaticsreview.com/uploads/2023/12/01184130/viamd.jpg)
[Tutorial] Installing VIAMD on Ubuntu (Linux).
Visual Interactive Analysis of Molecular Dynamics (VIAMD) is a tool that allows…
![[Tutorial] Performing docking using DockingPie plugin in PyMOL.](https://img.bioinformaticsreview.com/uploads/2023/10/25151930/dockingpie1.jpg)
[Tutorial] Performing docking using DockingPie plugin in PyMOL.
DockingPie is a PyMOL plugin to perform computational docking within PyMOL .…
How to install the DockingPie plugin on PyMOL?
DockingPie is a plugin of PyMOL made to fulfill the purpose of…
How to predict binding pocket/site using CASTp server?
The CASTp server allows you to predict the binding sites in a…
Video Tutorial: Calculating binding pocket volume using PyVol plugin.
This is a video tutorial for calculating binding pocket volume using the…
How to generate topology from SMILES for MD Simulation?
If you need to generate the topology of molecules using their SMILES,…
![[Tutorial] Installing jdock on Ubuntu (Linux).](https://img.bioinformaticsreview.com/uploads/2023/05/09092952/jdock.jpg)
[Tutorial] Installing jdock on Ubuntu (Linux).
jdock is an extended version of idock . It has the same…