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Most widely used tools to analyze multiple sequence alignments

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Multiple sequence alignments (MSAs) are quite valuable in terms of studying new enzymes or organisms. They provide insights to identify their structures and functions. For this purpose, we need sophisticated tools to analyze large MSAs. This article will mention a few important and useful alignment viewers with various functions to perform on the MSAs. Continue reading “Most widely used tools to analyze multiple sequence alignments” »

Installing MODELLER on Linux/Ubuntu

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MODELLER is a software package which is used to predict protein three-dimensional structures [1,2]. MODELLER can be used for other tasks such as modeling of loops in proteins, multiple alignments of structures, comparison of protein structures, and many others. In this article, I will explain how to install MODELLER on Linux/Ubuntu. Continue reading “Installing MODELLER on Linux/Ubuntu” »

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