Tools

A collection of articles explaining installation and usage of different bioinformatics tools.

Latest Tools News

How to install the LigAlign plugin on Pymol on Ubuntu (Linux)?

Few errors appear when we try to run the LigAlign plugin in…

Dr. Muniba Faiza

How to install multiple Pymol versions on Ubuntu (Linux)?

Sometimes we need to access old versions of Pymol . Running some…

Dr. Muniba Faiza

[Tutorial] Installing Pymol on Mac OS.

Previously, we provided a tutorial for Pymol installation on Ubuntu. In this…

Tariq Abdullah

How to install VMD on Ubuntu?

In this article, we are going to install VMD on Ubuntu.

Dr. Muniba Faiza

How to install GROMACS on Apple M1 (MacOS)?

We have provided a few articles on GROMACS installation on Ubuntu. In…

Dr. Muniba Faiza

PyMol: Uses & Applications

PyMol is one of the most widely used bioinformatics software. Generally, it…

Dr. Muniba Faiza

How to take snapshots of structure at specific times in GROMACS?

It is important to see the behavior of protein during an MD…

Tariq Abdullah

[Tutorial] How to install Autodock Vina on Mac OS?

We have provided several articles on Vina installation on Ubuntu including video…

Dr. Muniba Faiza

GENPPI- Tool to create protein interaction networks from genomes.

A new software called GENPPI is developed to create protein interaction networks…

Tariq Abdullah

SWISS-MODEL: Uses & Applications

SWISS-MODEL is a bioinformatics tool that is widely used for protein structure…

Dr. Muniba Faiza

How to save high resolution images in Pymol using command line?

Previously, we have provided a tutorial on saving good-quality images using Pymol…

Tariq Abdullah

How to find a best fit model using IQ-TREE?

Previously, we have provided an installation tutorial for IQ-TREE on Ubuntu. In…

Dr. Muniba Faiza

How to save good quality images in Pymol GUI?

Pymol is a Python-based molecular viewer that is used for multiple purposes.…

Dr. Muniba Faiza

How to install IQ-TREE on Ubuntu (Linux)?

IQ-TREE is a bioinformatics software for phylogenetic/phylogenomic inference. It is available as…

Dr. Muniba Faiza

Installing Snakemake on Ubuntu (Linux)

Snakemake is a workflow management system to create scalable data analyses .…

Tariq Abdullah

Performing in silico mutagenesis using Pymol?

Pymol is a molecular viewer that is mostly used for visualization purposes.…

Dr. Muniba Faiza

HMMER- Uses & Applications

HMMER is a well-known bioinformatics tool/software. It offers a web server and…

Tariq Abdullah

How to compare two pairwise alignments using Modeller-10.1?

Modeller-10.1 is the latest version of the software. We can perform multiple…

Dr. Muniba Faiza

Installing MODELLER 10.1 on Linux/Ubuntu

MODELLER is a software package that is generally used to predict protein…

Dr. Muniba Faiza

Modeller- Uses & Applications

Modeller is a standalone tool for homology modeling or comparative modeling of…

Tariq Abdullah