Tools - Page 3

A collection of articles explaining installation and usage of different bioinformatics tools.

vcf2fhir- A New Tool to Convert VCF files into HL7 FHIR Format

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A new utility is developed to convert variant calling format (VCF) files into HL7 FHIR format for the purpose of genomics electronic health records (EHR) integration. This is known as vcf2fhir [1]. Keep Reading

Installing Bismark on Ubuntu

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Bismark is a bioinformatics tool to map bisulfite treated sequencing reads to a genome [1]. It also determines cytosine methylation sites. In this article, we will install Bismark on Ubuntu. Keep Reading

FiNGS- A New Software providing Filters for Next Generation Sequencing

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We use somatic variant callers to detect mutations in cancer samples by comparing sequencing data tumor and normal sample pairs. This is followed by some ad-hoc filtering that may produce low precision data resulting in a large number of false positives. Keep Reading

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