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Muniba Faiza

Muniba Faiza has 66 articles published.

A perl script to convert multiline FASTA sequences into a single line

in Bioinformatics Programming by

There are different software or tools which require different kinds of input, especially, when you are trying to developing a pipeline or want to process multiple large files.

If you are dealing with a big FASTA file consisting of thousands of sequences split into a particular number of residues per line, and you want each sequence into a single line, then you can use this simple Perl program. Continue reading “A perl script to convert multiline FASTA sequences into a single line” »

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How to perform blind docking using AutoDock Vina?

in Docking/Drug Discovery/Softwares/Tools by

Blind docking is done when the catalytic/binding residues are unknown in a protein, hence, the binding pocket is unknown. In a previous article, we showed how to perform site-specific docking using Autodock Vina, where we bound a ligand in a catalytic pocket of a protein. Now, this article will cover the blind docking using Autodock Vina. Continue reading “How to perform blind docking using AutoDock Vina?” »

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