Tools

A collection of articles explaining installation and usage of different bioinformatics tools.

Latest Tools News

Easy installation of some alignment software on Ubuntu (Linux) 18.04 & 20.04

There are commonly used alignment programs such as muscle, blast, clustalx, and…

Dr. Muniba Faiza

Installing CDK (Chemistry Development Kit) on Ubuntu (Linux)

CDK stands for chemistry development kit . This is an open source…

Dr. Muniba Faiza

VISPR- A new tool to visualize CRISPR screening experiments

As CRISPR/Cas9 is a well-known genome editing technology, it is important to…

Tariq Abdullah

RNAdetector- New Tool for RNA-Seq Data Analysis

In this article, we discuss a new tool that is developed for…

Tariq Abdullah

Easy installation of GROMACS on Ubuntu 18.04 & 20.04

We have provided several articles on GROMACS installation on Ubuntu including the…

Dr. Muniba Faiza

How to install sdsorter on Ubuntu (Linux)?

sdsorter is a tool that helps in the easy manipulation of SDF…

Dr. Muniba Faiza

Where to find Docking and MD simulation software?

Docking and simulation are two of the methods that are most widely…

Dr. Muniba Faiza

IPD2.0- An Updated Version of IPD to Analyze the SARS-CoV-2 Genome

IPD2.0 is an updated version of the Infectious Pathogen Detector (IPD) .…

Tariq Abdullah

Installing Pycharm on Ubuntu (Linux)

Pycharm is an integrated development environment (IDE) for developers. It combines Python…

Tariq Abdullah

Installing RDPTools on Ubuntu (Linux)

RDP provides analysis tools called RDPTools. These tools are used to high-throughput…

Dr. Muniba Faiza

MOCCA- A New Suite to Model cis- regulatory Elements for Motif Occurrence Combinatorics

cis-regulatory elements are DNA sequence segments that regulate gene expression. cis-regulatory elements…

Tariq Abdullah

How BLAST works – Concepts, Types, & Methods Explained

BLAST stands for Basic Local Alignment Search Tool. It is a local…

Dr. Muniba Faiza

Tutorial: Basic Bioinformatics Software Installation on Ubuntu (Linux)

In this article, we are going to install some basic bioinformatics tools…

Dr. Muniba Faiza

Most widely used tools for drug-drug interaction prediction

Drug-drug interaction is an important method in bioinformatics, especially in the case…