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RNA-seq analysis

RNAdetector- New Tool for RNA-Seq Data Analysis

Tariq Abdullah

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RNAdetector- New Tool for RNA-Seq Data Analysis

In this article, we discuss a new tool that is developed for RNA-Seq data analysis. A new tool called RNAdetector [1] is developed for RNA-Seq data analysis.

RNAdetector is a user-friendly stand-alone tool and a cloud-based platform that helps in RNA-Seq data analysis. It provides an easy-to-use graphical user interface that helps in analyzing coding and non-coding RNAs from RNA datasets.

RNAdetector is a comprehensive pipeline that allows mRNAs and ncRNAs analysis including several classes of humans, C.elegans, and mice [1]. They are stored in a remote repository of RNAdetector that can be easily downloaded from the user interface. Besides, users can perform downstream analysis and miRNA-sensitive topological pathway analysis.

RNAdetector is available as a Docker container for its easy installation. It is cross-platform and requires input files such as FASTQ, SAM, or BAM files. RNAdetector is freely available to download from https://rnadetector.atlas.dmi.unict.it/download.html. The source code is available on GitHub and the documentation can be found at https://github.com/alessandrolaferlita/RNAdetector/wiki/Requirements-and-Setup.

For more details, read here.


References

  1. La Ferlita, A., Alaimo, S., Di Bella, S. et al. (2021). RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinformatics 22, 298.

 

Tariq is founder of Bioinformatics Review and CEO at IQL Technologies. His areas of expertise include algorithm design, phylogenetics, MicroArray, Plant Systematics, and genome data analysis. If you have questions, reach out to him via his homepage.

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