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How to install Kpax on Ubuntu (Linux)?

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How to install Kpax on Ubuntu (Linux)?
Kpax is a bioinformatics program to search and ali

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Tariq is founder of Bioinformatics Review and CEO at IQL Technologies. His areas of expertise include algorithm design, phylogenetics, MicroArray, Plant Systematics, and genome data analysis. If you have questions, reach out to him via his homepage.

Software

[Tutorial] How to install openbabel on Ubuntu (Linux)?

Dr. Muniba Faiza

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Installing OpenBabel on Ubuntu
Open Babel is an open-source chemical toolbox for

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Software

How to install & execute Discovery Studio Visualizer on Ubuntu (Linux)?

Dr. Muniba Faiza

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how to install Discovery Studio Visualizer on Ubuntu (Linux)?
DS Visualizer is a comprehensive, free molecular m

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Software

[Tutorial] Installing HTSlib on Ubuntu (Linux).

Dr. Muniba Faiza

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[Tutorial] Installing HTSlib on Ubuntu (Linux).
HTSlib is an open-source C library designed for ha

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MD Simulation

List of widely used MD Simulation Analysis Tools.

Dr. Muniba Faiza

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List of widely used MD Simulation Analysis Tools.
Molecular Dynamics (MD) simulation analysis involv

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Software

[Tutorial] Installing ProteStAr on Ubuntu (Linux).

Dr. Muniba Faiza

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Installing Protestar on Ubuntu
ProteStAr is a bioinformatics tool to compress pro

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Software

[Tutorial] How to install 3Dmapper on Ubuntu (Linux)?

Dr. Muniba Faiza

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Installing 3Dmapper on Ubuntu (Linux).
Understanding the relationship between genes and p

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Software

CMake installation and upgrade: What worked & what didn’t?!

Dr. Muniba Faiza

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CMake installation and upgrade: What worked & what didn’t?!
CMake is a widely used cross-platform build system

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Bioinformatics Programming

Free_Energy_Landscape-MD: Python package to create Free Energy Landscape using PCA from GROMACS.

Dr. Muniba Faiza

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In molecular dynamics (MD) simulations, a free ene

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Bioinformatics News

VS_Analysis: A Python package to perform post-virtual screening analysis

Dr. Muniba Faiza

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VS_Analysis: A Python package to perform post-virtual screening analysis
Virtual screening (VS) is a crucial aspect of bioi

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Bioinformatics Programming

vs_interaction_analysis.py: Python script to perform post-virtual screening analysis

Dr. Muniba Faiza

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vs_interaction_analysis.py: Python script to perform post-virtual screening analysis
Analyzing the results of virtual screening (VS) pe

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Software

How to install Interactive Genome Viewer (IGV) & tools on Ubuntu?

Dr. Muniba Faiza

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How to install Interactive Genome Viewer (IGV) & tools on Ubuntu?
Interactive Genome Viewer (IGV) is an interactive

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MD Simulation

[Tutorial] Installing VIAMD on Ubuntu (Linux).

Dr. Muniba Faiza

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[Tutorial] Installing VIAMD on Ubuntu (Linux).
Visual Interactive Analysis of Molecular Dynamics

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Docking

[Tutorial] Performing docking using DockingPie plugin in PyMOL.

Dr. Muniba Faiza

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[Tutorial] Performing docking using DockingPie plugin in PyMOL.
DockingPie [1] is a PyMOL plugin to perform comput

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Docking

How to install the DockingPie plugin on PyMOL?

Dr. Muniba Faiza

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How to install DockingPie plugin on PyMOL?
DockingPie [1] is a plugin of PyMOL [2] made to fu

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Software

Video Tutorial: Calculating binding pocket volume using PyVol plugin.

Dr. Muniba Faiza

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Calculate Binding Pocket Volume in Pymol (using PyVol plugin).
This is a video tutorial for calculating binding p

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Software

How to generate topology from SMILES for MD Simulation?

Dr. Muniba Faiza

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How to generate topology from SMILES for MD Simulation?
If you need to generate the topology of molecules

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Software

[Tutorial] Installing jdock on Ubuntu (Linux).

Dr. Muniba Faiza

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[Tutorial] Installing jdock on Ubuntu (Linux).
jdock is an extended version of idock [1]. It has

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Software

How to upgrade cmake on Ubuntu (Linux)?

Dr. Muniba Faiza

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How to upgrade cmake on Ubuntu/Linux?
In bioinformatics, cmake is used to install multip

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Software

How to install GMXPBSA on Ubuntu (Linux)?

Dr. Muniba Faiza

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How to install GMXPBSA on Ubuntu (Linux)?
GMXPBSA is a tool to calculate binding free energy

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Docking

[Tutorial] Installing Pyrx on Windows.

Dr. Muniba Faiza

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[Tutorial] Installing Pyrx on Windows.
Pyrx [1] is another virtual screening software tha

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