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Where to find Docking and MD simulation software?

Dr. Muniba Faiza

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Where to find Docking and simulation software?

Docking and simulation are two of the methods that are most widely used in bioinformatics. In this article, we provide all important links to the software for docking and simulation where you can easily download them.

Let’s start with some important docking software that is most widely used.

Docking software

Docking output analysis software

Simulation Software

MD Simulation plot visualization software


Further Reading

  • https://bioinformaticsreview.com/20200807/tutorial-installing-autodock-vina-on-windows/
  • https://bioinformaticsreview.com/20191226/mgl-tools-autodock-vina-installation-frequently-asked-questions-and-answers/
  • https://bioinformaticsreview.com/20190618/video-tutorial-how-to-install-autodock-vina-on-ubuntu/
  • https://bioinformaticsreview.com/20170729/how-to-install-autodock-vina-on-ubuntu/

Dr. Muniba is a Bioinformatician based in New Delhi, India. She has completed her PhD in Bioinformatics from South China University of Technology, Guangzhou, China. She has cutting edge knowledge of bioinformatics tools, algorithms, and drug designing. When she is not reading she is found enjoying with the family. Know more about Muniba

RNA-seq analysis

RNAdetector- New Tool for RNA-Seq Data Analysis

Tariq Abdullah

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RNAdetector- New Tool for RNA-Seq Data Analysis

In this article, we discuss a new tool that is developed for RNA-Seq data analysis. A new tool called RNAdetector [1] is developed for RNA-Seq data analysis. (more…)

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MD Simulation

Easy installation of GROMACS on Ubuntu 18.04 & 20.04

Dr. Muniba Faiza

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Installing GROMACS on ubuntu

We have provided several articles on GROMACS [1] installation on Ubuntu including the easy installation method for GROMACS version 5.x.x. In this article, we will provide shell scripts to install the latest (2021 series) of GROMACS on Ubuntu 18.04 and 20.04. (more…)

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Sequence Analysis

FEGS- A New Feature Extraction Model for Protein Sequence Analysis

Tariq Abdullah

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FEGS- A New Feature Extraction Model for Protein Sequence Analysis

Protein sequence analyses include protein similarity, Protein function prediction, protein interactions, and so on. A new feature extraction model is developed for easy analysis of protein sequences. (more…)

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