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Where to find Docking and MD simulation software?

Dr. Muniba Faiza

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Where to find Docking and simulation software?

Docking and simulation are two of the methods that are most widely used in bioinformatics. In this article, we provide all important links to the software for docking and simulation where you can easily download them.

Let’s start with some important docking software that is most widely used.

Docking software

Docking output analysis software

Simulation Software

MD Simulation plot visualization software


Further Reading

  • https://bioinformaticsreview.com/20200807/tutorial-installing-autodock-vina-on-windows/
  • https://bioinformaticsreview.com/20191226/mgl-tools-autodock-vina-installation-frequently-asked-questions-and-answers/
  • https://bioinformaticsreview.com/20190618/video-tutorial-how-to-install-autodock-vina-on-ubuntu/
  • https://bioinformaticsreview.com/20170729/how-to-install-autodock-vina-on-ubuntu/

Dr. Muniba is a Bioinformatician based in New Delhi, India. She has completed her PhD in Bioinformatics from South China University of Technology, Guangzhou, China. She has cutting edge knowledge of bioinformatics tools, algorithms, and drug designing. When she is not reading she is found enjoying with the family. Know more about Muniba

Software

[Tutorial] Installing Rosetta 3.21 on Ubuntu

Dr. Muniba Faiza

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Installing Rosetta on Ubuntu

Rosetta is a bioinformatics software for modeling and protein structure analysis [1]. In this article, we are going to install this software on Ubuntu. (more…)

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OVarFlow- A GATK4-based variant calling workflow

Tariq Abdullah

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OVarFlow- A GATK4-based variant calling workflow

An automated workflow for single nucleotide polymorphisms detection is developed. This is known as OVarFlow [1]. This workflow also helps in the identification of insertions and deletions.  (more…)

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Generating multiple low-energy conformers using Avogadro

Dr. Muniba Faiza

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Generating multiple low-energy conformers using Avogadro

In our previous article, we generated multiple conformers using OpenBabel. In this article, we are going to generate multiple low-energy conformers of a ligand using Avogadro [1]. (more…)

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