Software
[Tutorial] Installing Rosetta 3.21 on Ubuntu
Rosetta is a bioinformatics software for modeling and protein structure analysis [1]. In this articl
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MD Simulation
How to solve ‘Could NOT find CUDA: Found unsuitable version “10.1”‘ error during GROMACS installation?
Compiling GROMACS [1] with GPU can be trivial. Previously, we have provided a few articles on the sa
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Previously, we installed the Autodock suite [1] on Ubuntu. Visit this article for details. Now, let&
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Autodock suite is used for docking small molecules [1]. Recently, Autodock-GPU [2] is developed to a
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Discovery Studio (DS) Visualizer (from BIOVIA) is a visualization tool for viewing, sharing, and ana
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Remote homologs are similar protein structures that share similar functions, but there is no easily
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Detecting viruses and bacteria in RNA-seq data with less false positive rate is a difficult task. A
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AlphaFold is a popular artificial intelligence based protein prediction tool [1]. Though it predicts
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Previously, we provided a tutorial for PyVol plugin [1] installation. In this article, we will calcu
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Electron density maps are available for most of the protein structures in PDB. Therefore, in this ar
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PyVOL [1] is an excellent plugin of Pymol [2] for pocket visualization of proteins. In this article,
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While trying to install Matlab [1], it generally gives an error stating “matlab: command not f
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Kpax is a bioinformatics program to search and align protein structures [1]. It is currently availab
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In the latest version of GROMACS (2022) [1], there are some issues regarding the gmx do_dssp command
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SMINA is a fork of AutoDock Vina supporting better scoring function and high-performance energy mini
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ClusCo is a bioinformatics software to perform clustering and comparison of protein models [1]. In t
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Running a plugin on an old version of Pymol [1] can give you multiple errors that are not easy to tr
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Few errors appear when we try to run the LigAlign plugin [1] in Pymol [2]. For example, if you try t
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Sometimes we need to access old versions of Pymol [1]. Running some plugins on Pymol is difficult du
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Previously, we provided a tutorial for Pymol installation on Ubuntu. In this article, we are going t
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In this article, we are going to install VMD [1] on Ubuntu. (more…)
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