[Tutorial] Installing Rosetta 3.21 on Ubuntu
Rosetta is a bioinformatics software for modeling and protein structure analysis . In this articl
How to solve ‘Could NOT find CUDA: Found unsuitable version “10.1”‘ error during GROMACS installation?
Compiling GROMACS  with GPU can be trivial. Previously, we have provided a few articles on the sa
Installing Autodock4 on MacOS.
Previously, we installed the Autodock suite  on Ubuntu. Visit this article for details. Now, let&
How to install Autodock4 on Ubuntu?
Autodock suite is used for docking small molecules . Recently, Autodock-GPU  is developed to a
DS Visualizer: Uses & Applications
Discovery Studio (DS) Visualizer (from BIOVIA) is a visualization tool for viewing, sharing, and ana
Protein structure & folding information exploited from remote homologs.
Remote homologs are similar protein structures that share similar functions, but there is no easily
Pathonoia- A new tool to detect pathogens in RNA-seq data.
Detecting viruses and bacteria in RNA-seq data with less false positive rate is a difficult task. A
AlphaFill- New algorithm to fill ligands in AlphaFold models.
AlphaFold is a popular artificial intelligence based protein prediction tool . Though it predicts
How to calculate binding pocket volume using PyVol plugin in PyMol?
Previously, we provided a tutorial for PyVol plugin  installation. In this article, we will calcu
How to generate electron density map using Pymol?
Electron density maps are available for most of the protein structures in PDB. Therefore, in this ar
Installing PyVOL plugin in Pymol on Ubuntu (Linux).
PyVOL  is an excellent plugin of Pymol  for pocket visualization of proteins. In this article,
How to execute matlab from terminal in Ubuntu (Linux)?
While trying to install Matlab , it generally gives an error stating “matlab: command not f
How to install Kpax on Ubuntu (Linux)?
Kpax is a bioinformatics program to search and align protein structures . It is currently availab
How to run do_dssp command (mkdssp) in Gromacs 2022?
In the latest version of GROMACS (2022) , there are some issues regarding the gmx do_dssp command
Installing SMINA on Ubuntu (Linux).
SMINA is a fork of AutoDock Vina supporting better scoring function and high-performance energy mini
How to install ClusCo on Ubuntu (Linux)?
ClusCo is a bioinformatics software to perform clustering and comparison of protein models . In t
How to run LigAlign plugin on Pymol?
Running a plugin on an old version of Pymol  can give you multiple errors that are not easy to tr
How to install the LigAlign plugin on Pymol on Ubuntu (Linux)?
Few errors appear when we try to run the LigAlign plugin  in Pymol . For example, if you try t
How to install multiple Pymol versions on Ubuntu (Linux)?
Sometimes we need to access old versions of Pymol . Running some plugins on Pymol is difficult du
[Tutorial] Installing Pymol on Mac OS.
Previously, we provided a tutorial for Pymol installation on Ubuntu. In this article, we are going t
How to install VMD on Ubuntu?
In this article, we are going to install VMD  on Ubuntu. (more…)
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