In one of our previous posts, we provided a Python script for the virtual screening analysis of Autodock Vina. This script analyzes all log files obtained...
Pycharm [1] is an integrated development environment (IDE) for developers. It combines Python developer tools and provides an easy graphical user interface. In this article, we...
The output files obtained as a result of virtual screening (VS) using Autodock Vina may be large in number. It is difficult or quite impossible to...
Besides, Python & Perl, PHP is another language mostly used in bioinformatics programming. In this article, we provide a simple command to execute shell commands in...
In this article, a simple python script is provided that can be used to search for a specific character in a file.
In one of our previous articles, we have mentioned a few basic SQL queries to search in a database. In this article, we have described a...
In this article, basic SQL queries are described to create, update, drop, and perform other functions on a database.
Some basic operations on multi-FASTA sequence files is a tedious task without using bioinformatics programming. It helps in modifying FASTA sequences or their headers such as...
Here are simple Perl scripts to filter out FASTA sequences from a multi-fasta file based on sequence length.
We have published various articles on bioinformatics programming dealing with large files consisting of multiple FASTA sequences. Here is a list of articles related to operations...
Dealing with thousands of FASTA sequences is a tedious task without using bioinformatics programming. It eases multiple minute tasks to be performed on FASTA sequences or...
In a large file of FASTA sequences, it is nearly impossible to perform some operations manually. This is a simple Perl script to find out duplicate...
Markov Cluster Algorithm (MCL) is a clustering algorithm that clusters networks [1]. One of its applications is in clustering protein or peptide sequences. This is a...
Here is a simple Perl script to concatenate multiline FASTA sequences into a single line. A similar Perl script has been provided in one of the...
Here is a simple Perl script to search for motif patterns in a large FASTA file with multiple sequences.
There are different software or tools which require different kinds of input, especially, when you are trying to developing a pipeline or want to process multiple...
Here is a simple function in PHP to read fasta sequences from a file.
This is a simple Perl script to extract FASTA sequences from a large fasta file depending on the matching fasta headers present in another file.
This is a simple Perl script to read a multifasta file as a hash.
Bioinformatics analyses have become long and difficult as it involves a large number of steps implemented for data processing. Bioinformatics pipelines are developed to make this...
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