Can we use site-specific docking on PDB id without ligand bind on it, which we know the active or binding site from other literatur or their homolog?
User Changed status to publish November 23, 2024
Can we use site-specific docking on PDB id without ligand bind on it, which we know the active or binding site from other literatur or their homolog?
Yes, you can, if it’s binding site is unknown, you can predict. But generally, the binding sites of protein structures available in PDB can be easily found in the literature.
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