Video Tutorial: Fix broken Vina output in DS Visualizer.
DockingAnalyzer.py: A New Python script to Identify Ligand Binding in Protein Pockets.
VS_Analysis: A Python package to perform post-virtual screening analysis
vs_interaction_analysis.py: Python script to perform post-virtual screening analysis
[Tutorial] Performing docking using DockingPie plugin in PyMOL.
List of widely used MD Simulation Analysis Tools.
Free_Energy_Landscape-MD: Python package to create Free Energy Landscape using PCA from GROMACS.
[Tutorial] Installing VIAMD on Ubuntu (Linux).
Energy minimization and equilibration of simple protein using NAMD & VMD.
Generating topology of molecule for AMBER forcefield for GROMACS.
[Tutorial] How to install openbabel on Ubuntu (Linux)?
How to install & execute Discovery Studio Visualizer on Ubuntu (Linux)?
[Tutorial] Installing HTSlib on Ubuntu (Linux).
[Tutorial] Installing ProteStAr on Ubuntu (Linux).
HMMER- Uses & Applications
Easy installation of some alignment software on Ubuntu (Linux) 18.04 & 20.04
FEGS- A New Feature Extraction Model for Protein Sequence Analysis
Installing RDPTools on Ubuntu (Linux)
NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences
MOCCA- A New Suite to Model cis- regulatory Elements for Motif Occurrence Combinatorics
vs_Analysis.py: A Python Script to Analyze Virtual Screening Results of Autodock Vina
How to search motif pattern in FASTA sequences using Perl hash?
How to read fasta sequences from a file using PHP?
How to read fasta sequences as hash using perl?
How to copy and rename files simultaneously in same directory in Ubuntu (Linux)?
This Month in Bioinformatics- Research Updates of March 2022
This month in Bioinformatics- Research Updates of November 2021
This Month in Bioinformatics- Research Updates of October 2021
This Month in Bioinformatics- Research Updates of June 2021
CNN-DDI: A drug-drug interaction prediction method using convolutional neural networks
DrugShot- A new web-based application to retrieve list of small molecules.
Most widely used tools for drug-drug interaction prediction
How to download small molecules from ZINC database for virtual screening?
How to find a best fit model using IQ-TREE?
Installing TREE-PUZZLE on Ubuntu
Tutorial: Constructing phylogenetic tree using MEGA7
Update: A multi-epitope in silico vaccine candidate designed for Covid-19
Phylogenetics analysis of SARS-CoV-2 spike glycoproteins
How to predict binding pocket/site using CASTp server?
Video Tutorial: Calculating binding pocket volume using PyVol plugin.
Protein structure & folding information exploited from remote homologs.
How to generate electron density map using Pymol?
How to install Kpax on Ubuntu (Linux)?
CMake installation and upgrade: What worked & what didn’t?!
Common mistakes made during computational docking.
How to download FASTA sequences from PDB for multiple structures?
How to install the LigAlign plugin on Pymol on Ubuntu (Linux)?
Proteins shape analyses reveal novel forms and connections.
What is MANE project?
Tutorial: Vina Output Analysis Using PyMol
Video Tutorial: Autodock Vina Result Analysis with PyMol
Genome editing of human embryos using CRISPR/Cas9- crossing the ethics of gene editing?
How to perform docking in a specific binding site using AutoDock Vina?
CoolBox- An open-source toolkit for genomic data visualization
VISPR- A new tool to visualize CRISPR screening experiments
How to install Cortex on Ubuntu?
How to Compress and Decompress FASTQ, SAM/BAM & VCF Files using genozip?
Installing BCFtools on Ubuntu
CASTp (Computed Atlas of Surface Topography of proteins) server is used to predict binding pockets and cavities in proteins [1]. It displays binding pockets precisely and...
