Software
MGL Tools & Autodock Vina installation: Frequently Asked Questions and Answers
I have been receiving several e-mails from researchers and students alike regarding the installation of MGL Tools and Autodock Vina on Ubuntu. Most questions are similar in nature, so I thought of answering them once and for all. In this article, I have collected some frequently asked questions and provided the link to their answers present in our question-answer section of Bioinformatics Review.
Question: Error in running autodock vina adt mgltools on Linux.
Question: Error while trying to open Autodock tools.
Question: Problem in launching Autodock tools from the terminal.
Question: Problem in moving Autogrid and Autodock.
Question: How should I use “pmv” or “adt”?
Question: Error in running Autodock Vina from the terminal.
Question: Unable to run Autodock using “adt” alias.
Question: Error while installing mgltools.
If these are not the questions you are looking for, then feel free to ask in our ‘Bioinformatics Discussion‘ section or write to [email protected].
Electron density maps are available for most of the protein structures in PDB. Therefore, in this article, we are using PDB to generate electron density maps in Pymol.
PyVOL [1] is an excellent plugin of Pymol [2] for pocket visualization of proteins. In this article, we will install the PyVOL plugin in Pymol on Ubuntu. (more…)
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