Tag: command-line

Aligning DNA reads against a local database using DIAMOND

DIAMOND is a program for high throughput pairwise alignment of DNA reads…

Dr. Muniba Faiza

How to use Clustal Omega and MUSCLE command-line tools for multiple sequence alignment?

Clustal Omega and MUSCLE are bioinformatics tools that are used for multiple…

Dr. Muniba Faiza

Multiple Sequence Alignment and Phylogenetic Tree construction using ClustalW2 command-line tool

ClustalW2 is a bioinformatics tool for multiple sequence alignment of DNA or…

Tariq Abdullah

How to perform graph-based clustering of peptide/protein sequences using MCL?

Markov Cluster Algorithm (MCL) is a clustering algorithm that clusters networks .…

Tariq Abdullah

Perl one-liners for bioinformaticians

Perl one-liners are extremely short Perl scripts written in the form of…

Matej Lexa