This is a video tutorial of our existing article “Molecular Dynamics (MD) Simulation using GROMACS“.
How to install GROMACS on Apple M1 (MacOS)?
How to take snapshots of structure at specific times in GROMACS?
It is important to see the behavior of protein during an MD simulation. This can be achieved by taking snapshots in the form of PDB format. In this article, we have provided a few commands that you can use to take snapshots of a complete system or protein during MD simulation. (more…)
GROMACS: Uses & Applications
GROMACS stands for GROningen MAchine for Chemical Simulations . It is a very popular and one of the most widely used open-source bioinformatics software. It is generally used for molecular dynamics simulation of macromolecules. In this article, we will explain its uses and applications in bioinformatics studies. (more…)