This is a video tutorial of our existing article “Molecular Dynamics (MD) Simulation using GROMACS“.
GROMACS: Uses & Applications
GROMACS stands for GROningen MAchine for Chemical Simulations . It is a very popular and one of the most widely used open-source bioinformatics software. It is generally used for molecular dynamics simulation of macromolecules. In this article, we will explain its uses and applications in bioinformatics studies. (more…)
Easy installation of GROMACS on Ubuntu 18.04 & 20.04
We have provided several articles on GROMACS  installation on Ubuntu including the easy installation method for GROMACS version 5.x.x. In this article, we will provide shell scripts to install the latest (2021 series) of GROMACS on Ubuntu 18.04 and 20.04. (more…)
How to create an index file in GROMACS for MD simulation?
MD simulation is a tricky technique if you don’t understand what you are doing through various parameters and algorithms in GROMACS . That may lead to several errors. In this article, we are going to create an index file for the protein groups in GROMACS to solve such errors. (more…)