Tag: docking

Installing Pyrx on Ubuntu

Pyrx is a bioinformatics software that is used for the virtual screening…

Tariq Abdullah

Identifying binding sites in receptors using AutoSite tool

AutoSite is a computational method and tool that is used for the…

Tariq Abdullah

How to perform Flexible Docking using Autodock Vina?

Flexible docking is when some residues in the interacting bodies (receptor and…

Dr. Muniba Faiza

How to Find Binding Pocket/ Binding Site for Docking?

Finding binding sites/pockets in a target protein is one of the important…

Dr. Muniba Faiza

Virtual Screening: Frequently Asked Questions & Answers for Starters

Virtual screening can be difficult for beginners. Here are some FAQs for…

Dr. Muniba Faiza

EasyVS: A new webserver for easy virtual screening

EasyVS is a web-based bioinformatics tool that simplifies the selection of the…

Dr. Muniba Faiza

Tutorial: Installing Autodock Vina on Windows

We have provided several tutorials on Autodock Vina software including its installation…

Tariq Abdullah

Common mistakes made during Autodock Vina Installation and Execution

Several errors occur while installing MGLTools and Autodock Vina on Ubuntu. We…

Dr. Muniba Faiza

Predict putative protein targets for small molecules using a new tool

It is computationally costly to predict target proteins for query compounds or…

Tariq Abdullah

Virtual Screening Methodology for Structure-based Drug Designing

Virtual High Throughput Screening (vHTS), also known as Virtual Screening (VS) is…

Dr. Muniba Faiza

How to perform docking in a specific binding site using AutoDock Vina?

AutoDock Vina is a bioinformatics tool that is used to perform in-silico…

Dr. Muniba Faiza