Bioinformatics ReviewBioinformatics Review
Notification Show More
Font ResizerAa
  •  Home
  • Docking
  • MD Simulation
  • Tools
  • More Topics
    • Softwares
    • Sequence Analysis
    • Algorithms
    • Bioinformatics Programming
    • Bioinformatics Research Updates
    • Drug Discovery
    • Phylogenetics
    • Structural Bioinformatics
    • Editorials
    • Tips & Tricks
    • Bioinformatics News
    • Featured
    • Genomics
    • Bioinformatics Infographics
  • Community
    • BiR-Research Group
    • Community Q&A
    • Ask a question
    • Join Telegram Channel
    • Join Facebook Group
    • Join Reddit Group
    • Subscription Options
    • Become a Patron
    • Write for us
  • About Us
    • About BiR
    • BiR Scope
    • The Team
    • Guidelines for Research Collaboration
    • Feedback
    • Contact Us
    • Recent @ BiR
  • Subscription
  • Account
    • Visit Dashboard
    • Login
Font ResizerAa
Bioinformatics ReviewBioinformatics Review
Search
Have an existing account? Sign In
Follow US
SoftwareTools

Installation of LigPlot+ on Ubuntu

Dr. Muniba Faiza
Last updated: May 20, 2020 5:47 pm
Dr. Muniba Faiza
Share
2 Min Read
SHARE

LigPlot+ is a bioinformatics software to visually analyze the protein-ligand interactions in 2D [1]. It requires a Java interface to run and can be executed on Ubuntu, Windows, and macOS. In this tutorial, we will install LigPlot+ on Ubuntu. 

Contents
PreparingDownloading Ligplot+InstallingExecuting LigPlot+References

Preparing

At first, update and upgrade your system using the following commands:

$ sudo apt-get update
$ sudo apt-get upgrade

Also, Ligplot+ requires the latest version of the Java SE Runtime Environment (JRE) which can be found here.

Downloading Ligplot+

The latest version of LigPlot [2] can be downloaded from here. You have to register yourself first which will be valid for a year. It can be easily downloaded again.

Installing

Open a terminal and change to the directory where you have downloaded the software. Let’s say here it is ‘Downloads’.

$ cd Downloads

$ unzip LigPlus.zip

Executing LigPlot+

Open a terminal and type the following command:

$ java -cp /path/ -jar LigPlus.jar

here /path/ is the path to the directory where the LigPlus.jar file is located.

It will open the LigPlot+.

You can also create an alias.

Open the terminal and type the following commands:

$ sudo gedit ~/.bashrc

It will open the bashrc file, go to the end of the file and add the following command:

alias ligplus='java -cp /path/LigPlus/ -jar /path/LigPlus.jar'

Save the file, go back to the terminal and type:

$ source ~/.bashrc

To start, Ligplot+, type $ ligplus in a terminal.

References

  1. Laskowski, R. A., & Swindells, M. B. (2011). LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.
  2. Wallace, A. C., Laskowski, R. A., & Thornton, J. M. (1995). LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein engineering, design and selection, 8(2), 127-134.
Share This Article
Facebook Copy Link Print
ByDr. Muniba Faiza
Follow:
Dr. Muniba is a Bioinformatician based in New Delhi, India. She has completed her PhD in Bioinformatics from South China University of Technology, Guangzhou, China. She has cutting edge knowledge of bioinformatics tools, algorithms, and drug designing. When she is not reading she is found enjoying with the family. Know more about Muniba
Leave a Comment

Leave a Reply Cancel reply

You must be logged in to post a comment.

Starting in Bioinformatics? Do This First!
Starting in Bioinformatics? Do This First!
Tips & Tricks
[Editorial] Is it ethical to change the order of authors’ names in a manuscript?
Editorial Opinion
Installing bbtools on Ubuntu
[Tutorial] Installing BBTools on Ubuntu (Linux).
Sequence Analysis Software Tools
wes_data_analysis Whole Exome Sequencing (WES) Data visualization Toolkit
wes_data_analysis: Whole Exome Sequencing (WES) Data visualization Toolkit
Bioinformatics Programming GitHub Python

You Might Also Like

Thumbnail: Video tutorial: Installing GROMACS on Ubuntu
Molecular dynamicsSoftwareToolsVideo Tutorial

Video tutorial: Installing GROMACS on Ubuntu

November 23, 2024
VISPR- A new tool to visualize CRISPR screening experiments
GenomicsSoftwareTools

VISPR- A new tool to visualize CRISPR screening experiments

July 2, 2021
How to solve ‘Could NOT find CUDA: Found unsuitable version “10.1”‘ error during GROMACS installation?
MD SimulationSoftwareTools

How to solve ‘Could NOT find CUDA: Found unsuitable version “10.1”‘ error during GROMACS installation?

April 18, 2023
IonCRAM for Ion Torrent file compression
NGSTools

IonCRAM: New Tool for Ion Torrent Sequence Files Compression

September 28, 2020
Copyright 2024 IQL Technologies
  • Journal
  • Customer Support
  • Contact Us
  • FAQs
  • Terms of Use
  • Privacy Policy
  • Cookie Policy
  • Sitemap
Welcome Back!

Sign in to your account

Username or Email Address
Password

Lost your password?

Not a member? Sign Up