How to obtain ligand structures in PDB format from PDB ligand IDs?
Previously, we provided a similar script to download ligand SMILES from PDB…
How to generate electron density map using Pymol?
Electron density maps are available for most of the protein structures in…
How to convert the PDB file to PSF format?
VMD allows converting PDB to PSF format but sometimes it gives multiple…
How to download FASTA sequences from PDB for multiple structures?
In this article, we are going to download FASTA sequences for multiple…
How to extract x,y,z coordinates of atoms from PDB file?
The x, y, and z coordinates of atoms are provided in the…
dssp_parser: A new Python package to extract helices from DSSP files.
A new Python package named 'dssp_parser' is developed to parse DSSP files.…
Converting smiles into 3D structures using openbabel.
Openbabel is used to inter-convert many file formats . It is available…