Tag: python

wes_data_analysis: Whole Exome Sequencing (WES) Data visualization Toolkit

Whole Exome Sequencing (WES) is a genomic technique that sequences only the…

Dr. Muniba Faiza

How to obtain SMILES of ligands using PDB ligand IDs?

Fetching SMILE strings for a given number of SDF files of chemical…

Dr. Muniba Faiza

vs_analysis_compound.py: Python script to search for binding affinities based on compound names.

Previously, we have provided the vs_analysis.py script to analyze virtual screening (VS)…

Dr. Muniba Faiza

How to extract x,y,z coordinates of atoms from PDB file?

The x, y, and z coordinates of atoms are provided in the…

Tariq Abdullah

Installing Pycharm on Ubuntu (Linux)

Pycharm is an integrated development environment (IDE) for developers. It combines Python…

Tariq Abdullah

How to search for a specific character in a file using Python?

In this article, a simple python script is provided that can be…

Dr. Muniba Faiza

Prepare receptor and ligand files for docking using Python scripts

Docking software such as Autodock4 and Autodock Vina require input receptor and…

Dr. Muniba Faiza