Bioinformatics ReviewBioinformatics Review
Notification Show More
Font ResizerAa
  •  Home
  • Docking
  • MD Simulation
  • Tools
  • More Topics
    • Softwares
    • Sequence Analysis
    • Algorithms
    • Bioinformatics Programming
    • Bioinformatics Research Updates
    • Drug Discovery
    • Phylogenetics
    • Structural Bioinformatics
    • Editorials
    • Tips & Tricks
    • Bioinformatics News
    • Featured
    • Genomics
    • Bioinformatics Infographics
  • Community
    • BiR-Research Group
    • Community Q&A
    • Ask a question
    • Join Telegram Channel
    • Join Facebook Group
    • Join Reddit Group
    • Subscription Options
    • Become a Patron
    • Write for us
  • About Us
    • About BiR
    • BiR Scope
    • The Team
    • Guidelines for Research Collaboration
    • Feedback
    • Contact Us
    • Recent @ BiR
  • Subscription
  • Account
    • Visit Dashboard
    • Login
Font ResizerAa
Bioinformatics ReviewBioinformatics Review
Search
Have an existing account? Sign In
Follow US
MD SimulationSoftwareTools

Easy installation of GROMACS on Ubuntu 18.04 & 20.04

Dr. Muniba Faiza
Last updated: June 26, 2021 3:45 pm
Dr. Muniba Faiza
Share
2 Min Read
Installing GROMACS on ubuntu
SHARE

We have provided several articles on GROMACS [1] installation on Ubuntu including the easy installation method for GROMACS version 5.x.x. In this article, we will provide shell scripts to install the latest (2021 series) of GROMACS on Ubuntu 18.04 and 20.04.

Contents
Preparing systemDownloading the scriptFor Ubuntu 18.04For Ubuntu 20.04Installing GROMACSReferencesFurther Reading

If you are still looking to install an old version of GROMACS (5.x.x), please read this article. There you will find both elaborative as well as easy installation methods.

Preparing system

Press Ctrl+Alt+T and a terminal will open up. In the terminal, type:

$ sudo apt-get update

$ sudo apt-get upgrade

Downloading the script

We have created a new installer for you that will easily install the latest version of GROMACS (2021) on your system.

For Ubuntu 18.04

Download the script using the following command.

$ wget https://bioinformaticsreview.com/repository/gromacs-installer-2021-ubuntu18.04.sh

For Ubuntu 20.04

Download the script using the following command.

$ wget https://bioinformaticsreview.com/repository/gromacs-installer-2021-ubuntu20.04.sh

Installing GROMACS

If the installer doesn’t work for you, then proceed with the normal installation method mentioned in this article. You have to replace the old version with the new one. After downloading the appropriate script, proceed with the following steps.

  • Make the script executable
    $ chmod +x gromacs-installer-2021-ubuntu18.04.sh
    or
    $ chmod +x gromacs-installer-2021-ubuntu20.04.sh
  • start the installer
    $ ./gromacs-installer-2021-ubuntu18.04.sh
    or
    $ ./gromacs-installer-2021-ubuntu20.04.sh
  • If it shows an error stating “Permission denied“, then run the above commands with sudo as shown below:
    $ sudo ./gromacs-installer-2021-ubuntu18.04.sh
    or
    $ sudo ./gromacs-installer-2021-ubuntu20.04.sh

It will take a few minutes to finish the installation. After that, you can check for successful installation using the following command:

$ gmx pdb2gmx --version


References

  1. Abraham, M. J., Murtola, T., Schulz, R., Páll, S., Smith, J. C., Hess, B., & Lindahl, E. (2015). GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers. SoftwareX, 1, 19-25.

Further Reading

Installing Gromacs on Ubuntu for MD Simulation

Video tutorial: Installing GROMACS on Ubuntu

Tutorial: Molecular dynamics (MD) simulation using Gromacs

Tutorial: MD simulation output analysis of protein using GROMACS

Tutorial: MD Simulation of a Protein-Ligand Complex using GROMACS

 

 

TAGGED:easy installGromacsmd simulationUbuntu 18.04Ubuntu 20.04
Share This Article
Facebook Copy Link Print
ByDr. Muniba Faiza
Follow:
Dr. Muniba is a Bioinformatician based in New Delhi, India. She has completed her PhD in Bioinformatics from South China University of Technology, Guangzhou, China. She has cutting edge knowledge of bioinformatics tools, algorithms, and drug designing. When she is not reading she is found enjoying with the family. Know more about Muniba
Leave a Comment

Leave a Reply Cancel reply

You must be logged in to post a comment.

- Advertisement -
Ad image
10 years of Bioinformatics Review: From a Blog to a Bioinformatics Knowledge Hub!
Editorial
Starting in Bioinformatics? Do This First!
Starting in Bioinformatics? Do This First!
Tips & Tricks
[Editorial] Is it ethical to change the order of authors’ names in a manuscript?
Editorial Opinion
Installing bbtools on Ubuntu
[Tutorial] Installing BBTools on Ubuntu (Linux).
Sequence Analysis Software Tools

You Might Also Like

Installing Autodock4 on MacOS
SoftwareTools

Installing Autodock4 on MacOS.

April 13, 2023
SoftwareTools

How to blast against a particular set of local sequences (local database)?

May 20, 2020
How to find a best fit model using IQ-TREE?
PhylogeneticsSoftwareTools

How to find a best fit model using IQ-TREE?

December 28, 2021
Installing Bismark on Ubuntu
NGSSoftwareTools

Installing Bismark on Ubuntu

February 26, 2021
Copyright 2024 IQL Technologies
  • Journal
  • Customer Support
  • Contact Us
  • FAQs
  • Terms of Use
  • Privacy Policy
  • Cookie Policy
  • Sitemap
Welcome Back!

Sign in to your account

Username or Email Address
Password

Lost your password?

Not a member? Sign Up