Video Tutorial: Fix broken Vina output in DS Visualizer.
This is a video tutorial on fixing the Vina docking output in…
DockingAnalyzer.py: A New Python script to Identify Ligand Binding in Protein Pockets.
High-throughput virtual screening (HTVS) is a pivotal technique in drug discovery that…
VS_Analysis: A Python package to perform post-virtual screening analysis
Virtual screening (VS) is a crucial aspect of bioinformatics. As you may…
vs_interaction_analysis.py: Python script to perform post-virtual screening analysis
Analyzing the results of virtual screening (VS) performed with Autodock Vina can…
![[Tutorial] Performing docking using DockingPie plugin in PyMOL.](https://bioinformaticsreview.com/wp-content/uploads/2023/10/dockingpie1.jpg)
[Tutorial] Performing docking using DockingPie plugin in PyMOL.
DockingPie is a PyMOL plugin to perform computational docking within PyMOL .…
How to install the DockingPie plugin on PyMOL?
DockingPie is a plugin of PyMOL made to fulfill the purpose of…
![[Tutorial] Installing Pyrx on Windows.](https://bioinformaticsreview.com/wp-content/uploads/2023/04/pyrx-3.jpg)
[Tutorial] Installing Pyrx on Windows.
Pyrx is another virtual screening software that also offers to perform docking…
How to install Autodock4 on Ubuntu?
Autodock suite is used for docking small molecules . Recently, Autodock-GPU is…
What values are considered as good or bad in computational docking?
After performing computational docking, a question that comes to mind most is…
How to sort binding affinities based on a cutoff using vs_analysis.py script?
Previously, we have provided a Python script (vs_analysis.py) to analyze the virtual…
Virtual Screening using Autodock Vina: Frequently Asked Questions & Answers for Starters
Virtual Screening (VS) is one of the important techniques in bioinformatics. It…
![[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?](https://bioinformaticsreview.com/wp-content/uploads/2021/10/zn.jpg)
[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?
Proteins containing zinc atoms are docked in a different way than that…
How to generate config file for docking using Autodock Tools?
A configuration file is one of the required files for docking using…
How to install Autodock on Ubuntu (Linux) with CUDA GPU support?
Autodock is most widely used for docking. To accelerate the docking process,…
Autodock Vina: Uses & Applications
Autodock Vina is one of the most widely used bioinformatics software for…
How to perform virtual screening using Pyrx?
Pyrx is a bioinformatics tool to perform virtual screening . We previously…
How to perform metal ion-protein docking using idock?
Previously, we provided a tutorial on the installation of idock on Ubuntu…
How to analyze HADDOCK results using Pymol script generated from PRODIGY?
In one of our previously published articles, we demonstrated protein-protein docking using…
Installing PatchDock on Ubuntu (Linux)
PatchDock is a docking algorithm that is based on the shape complementarity…