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How to install Raccoon plugin on Ubuntu for virtual screening using Autodock?

in Bioinformatics Programming/Docking by

As mentioned in our previous articles, Autodock Vina [1] is a very useful bioinformatics tool for molecular docking and provides various options for site-specific docking and blind docking. But it seemed to be difficult to perform virtual screening using Autodock. Recently, Autodock has developed a plugin known as ‘Raccoon’ [2], which serves for this purpose. Continue reading “How to install Raccoon plugin on Ubuntu for virtual screening using Autodock?” »

Web-based tools for protein-peptide docking

in Docking/Tools by

Protein-protein interactions are considered necessary in the interactome analysis as they play an important in various biological processes such as post-translational modifications and signal transduction, and short peptides mediate around 40% of protein-protein interactions[1]. They are also found involved in some kind of infections and critical human diseases such as cancer [2,3]. Continue reading “Web-based tools for protein-peptide docking” »

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