Protein-protein docking using HADDOCK2.4 web server
HADDOCK2.4 web server (https://bianca.science.uu.nl/haddock2.4/) is used for protein-protein docking and their modeling.…
How to perform site-specific docking using Pyrx?
Pyrx is a virtual screening software that allows the docking of multiple…
How to install sdsorter on Ubuntu (Linux)?
sdsorter is a tool that helps in the easy manipulation of SDF…
Video Tutorial: How to use vs_analysis Python script for virtual screening result analysis of Autodock Vina?
This is a demonstration video of our previously mentioned Python script (vs_analysis.py)…
Basic Methodology to Predict Antigen-Antibody Interactions in silico
Antigen-antibody interactions play an important role in protecting our body from foreign…
What is Virtual Screening in Bioinformatics?
If you are a beginner in the field of bioinformatics, you must…
Blind Docking vs Site-specific Docking
We have provided several tutorials on docking including both types: blind docking…
Most widely used software for docking results image generation
Computational docking is an important technique in bioinformatics. The docking result interpretation…
What does the coordinates mean in docking?
Researchers working in the field of bioinformatics are well-aware of the word…
How to perform covalent docking using AutodockFR (ADFR)?
Docking is performed in different ways depending upon the requirements. In some…
Installing MGLTools2 package (ADFR/AGFR/AutoSite) on Ubuntu
MGLTools2 package comes with three different tools for docking: ADFR, AGFR, and…
Identifying binding sites in receptors using AutoSite tool
AutoSite is a computational method and tool that is used for the…
How to perform Flexible Docking using Autodock Vina?
Flexible docking is when some residues in the interacting bodies (receptor and…
How to Find Binding Pocket/ Binding Site for Docking?
Finding binding sites/pockets in a target protein is one of the important…
Installing GalaxyPepDock & Galaxy-Server on Ubuntu
GalaxyPepDock is a software used for protein-peptide docking based on interaction similarity.…
Virtual Screening: Frequently Asked Questions & Answers for Starters
Virtual screening can be difficult for beginners. Here are some FAQs for…
EasyVS: A new webserver for easy virtual screening
EasyVS is a web-based bioinformatics tool that simplifies the selection of the…
Tutorial: Installing Autodock Vina on Windows
We have provided several tutorials on Autodock Vina software including its installation…
Common mistakes made during Autodock Vina Installation and Execution
Several errors occur while installing MGLTools and Autodock Vina on Ubuntu. We…