Docking
Vina output analysis using Discovery Studio visualizer
The discovery studio (DS) visualizer [1] offers several features for analyzing docking results. In p
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![[Tutorial] How to install Autodock Vina on MacOS?](https://img.bioinformaticsreview.com/uploads/2022/01/01165858/adv-mac-400x240.jpg)
![[Tutorial] How to install Autodock Vina on MacOS?](https://img.bioinformaticsreview.com/uploads/2022/01/01165858/adv-mac-80x80.jpg)
Autodock suite is used for docking small molecules [1]. Recently, Autodock-GPU [2] is developed to a
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After performing computational docking, a question that comes to mind most is “what docking sc
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Bioinformatics Programming
How to sort binding affinities based on a cutoff using vs_analysis.py script?
Previously, we have provided a Python script (vs_analysis.py) to analyze the virtual screening (VS)
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Virtual Screening (VS) is one of the important techniques in bioinformatics. It can be easily perfor
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![[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?](https://bioinformaticsreview.com/wp-content/uploads/2021/10/zn.jpg)
Proteins containing zinc atoms are docked in a different way than that of the normal simple proteins
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A configuration file is one of the required files for docking using Autodock Vina. In this article,
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Autodock [1] is most widely used for docking. To accelerate the docking process, especially, during
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Autodock Vina [1] is one of the most widely used bioinformatics software for computational docking.
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Pyrx is a bioinformatics tool to perform virtual screening [1]. We previously provided an article on
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Previously, we provided a tutorial on the installation of idock on Ubuntu (Linux). In this article,
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idock [1] is a multithreaded software based on Autodock Vina. It is a virtual screening tool for fle
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In one of our previously published articles, we demonstrated protein-protein docking using HADDOCK2.
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PatchDock is a docking algorithm that is based on the shape complementarity principle [1,2]. It perf
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HADDOCK2.4 web server (https://bianca.science.uu.nl/haddock2.4/) [1] is used for protein-protein doc
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Pyrx [1] is a virtual screening software that allows the docking of multiple ligands with a target p
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sdsorter is a tool that helps in the easy manipulation of SDF files. It takes a single file as input
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Docking
Video Tutorial: How to use vs_analysis Python script for virtual screening result analysis of Autodock Vina?
This is a demonstration video of our previously mentioned Python script (vs_analysis.py) for virtual
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Antigen-antibody interactions play an important role in protecting our body from foreign molecules.
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If you are a beginner in the field of bioinformatics, you must have heard of the term “virtual
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We have provided several tutorials on docking including both types: blind docking & site-specifi
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