Vina output analysis using Discovery Studio visualizer
The discovery studio (DS) visualizer  offers several features for analyzing docking results. In p
How to install Autodock4 on Ubuntu?
Autodock suite is used for docking small molecules . Recently, Autodock-GPU  is developed to a
What values are considered as good or bad in computational docking?
After performing computational docking, a question that comes to mind most is “what docking sc
How to sort binding affinities based on a cutoff using vs_analysis.py script?
Previously, we have provided a Python script (vs_analysis.py) to analyze the virtual screening (VS)
Virtual Screening using Autodock Vina: Frequently Asked Questions & Answers for Starters
Virtual Screening (VS) is one of the important techniques in bioinformatics. It can be easily perfor
[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?
Proteins containing zinc atoms are docked in a different way than that of the normal simple proteins
How to generate config file for docking using Autodock Tools?
A configuration file is one of the required files for docking using Autodock Vina. In this article,
How to install Autodock on Ubuntu (Linux) with CUDA GPU support?
Autodock  is most widely used for docking. To accelerate the docking process, especially, during
Autodock Vina: Uses & Applications
Autodock Vina  is one of the most widely used bioinformatics software for computational docking.
How to perform virtual screening using Pyrx?
Pyrx is a bioinformatics tool to perform virtual screening . We previously provided an article on
How to perform metal ion-protein docking using idock?
Previously, we provided a tutorial on the installation of idock on Ubuntu (Linux). In this article,
How to install idock on Ubuntu?
idock  is a multithreaded software based on Autodock Vina. It is a virtual screening tool for fle
How to analyze HADDOCK results using Pymol script generated from PRODIGY?
In one of our previously published articles, we demonstrated protein-protein docking using HADDOCK2.
Installing PatchDock on Ubuntu (Linux)
PatchDock is a docking algorithm that is based on the shape complementarity principle [1,2]. It perf
Protein-protein docking using HADDOCK2.4 web server
HADDOCK2.4 web server (https://bianca.science.uu.nl/haddock2.4/)  is used for protein-protein doc
How to perform site-specific docking using Pyrx?
Pyrx  is a virtual screening software that allows the docking of multiple ligands with a target p
How to install sdsorter on Ubuntu (Linux)?
sdsorter is a tool that helps in the easy manipulation of SDF files. It takes a single file as input
Video Tutorial: How to use vs_analysis Python script for virtual screening result analysis of Autodock Vina?
This is a demonstration video of our previously mentioned Python script (vs_analysis.py) for virtual
Basic Methodology to Predict Antigen-Antibody Interactions in silico
Antigen-antibody interactions play an important role in protecting our body from foreign molecules.
What is Virtual Screening in Bioinformatics?
If you are a beginner in the field of bioinformatics, you must have heard of the term “virtual
Blind Docking vs Site-specific Docking
We have provided several tutorials on docking including both types: blind docking & site-specifi
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