[Tutorial] Installing BBTools on Ubuntu (Linux).
BBTools is a suite consisting of various bioinformatics tools for DNA and…
HMMER- Uses & Applications
HMMER is a well-known bioinformatics tool/software. It offers a web server and…
Easy installation of some alignment software on Ubuntu (Linux) 18.04 & 20.04
There are commonly used alignment programs such as muscle, blast, clustalx, and…
FEGS- A New Feature Extraction Model for Protein Sequence Analysis
Protein sequence analyses include protein similarity, Protein function prediction, protein interactions, and…
Installing RDPTools on Ubuntu (Linux)
RDP provides analysis tools called RDPTools. These tools are used to high-throughput…
NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences
It is necessary to detect highly variable regions in envelopes of viruses…
How to install ClustalW2 on Ubuntu?
Clustal packages are quite useful in multiple sequence alignments. Especially, when you…
Installing HMMER package on Ubuntu
HMMER tool is used for searching sequence homologs using profile hidden Markov…
Installing FASTX-toolkit on Ubuntu
FASTX-toolkit is a command-line bioinformatics software package for the preprocessing of short…
Aligning DNA reads against a local database using DIAMOND
DIAMOND is a program for high throughput pairwise alignment of DNA reads…
Installing MEME suite on Ubuntu
MEME suite is used to discover novel motifs in unaligned nucleotide and…
Installing BLAT- A Pairwise Alignment Tool on Ubuntu
BLAT is a pairwise sequence alignment algorithm that is used in the…
Homology search against a local dataset using NCBI-BLAST+ command-line tool
NCBI-BLAST+ command-line tool offers multiple functions to be performed on a large…
How to use Clustal Omega and MUSCLE command-line tools for multiple sequence alignment?
Clustal Omega and MUSCLE are bioinformatics tools that are used for multiple…
Multiple Sequence Alignment and Phylogenetic Tree construction using ClustalW2 command-line tool
ClustalW2 is a bioinformatics tool for multiple sequence alignment of DNA or…
Sequence search against a set of local sequences (local database) using phmmer
PHMMER is a sequence analysis tool used for protein sequences (http://hmmer.org; version…
Biotite: A bioinformatics framework for sequence and structure data analysis
Sequence and structural data in bioinformatics are ever-increasing and the need for…
Simulated sequence alignment software: An alternative to MSA benchmarks
In our previous article, we discussed different multiple sequence alignment (MSA) benchmarks…
Benchmark databases for multiple sequence alignment: An overview
Multiple sequence alignment (MSA) is a very crucial step in most of…
