Software

A collection of published articles on different bioinformatics software.

Latest Software News

How to perform protein structure modeling using I-Tasser stand-alone tool?

I-Tasser stands for the iterative threading assembly refinement is a well-known tool…

Tariq Abdullah

Intrinsically disordered proteins’ predictors and databases: An overview

Intrinsically unstructured proteins (IUPs) are the natively unfolded proteins which must be…

Tariq Abdullah

An introduction to the predictors of pathogenic point mutations

Single nucleotide variation is a change in a single nucleotide in a…

Dr. Muniba Faiza

How to install AutoDock Vina on Ubuntu?

AutoDock Vina is one of the most popular software in Bioinformatics, known…

Dr. Muniba Faiza

Recent advances in in-silico approaches for enzyme engineering

Enzymes are natural biocatalysts and an attractive alternative to chemicals providing improved…

Dr. Muniba Faiza

Lipidomics: An overview

Lipids are the essential metabolites in human body performing different functions such…

Dr. Muniba Faiza

A short introduction to protein structures modification and ModFinder

A lot of protein structures are determined on a large scale and…

Dr. Muniba Faiza

Methods to detect the effects of alternative splicing and transcription on proteins

Alternative splicing and the transcription are the most familiar processes amongst the…

Dr. Muniba Faiza

PcircRNA_finder: Tool to predict circular RNA in plants

The non-coding circular RNAs (circRNA) play important role in controlling cellular processes.…

Dr. Muniba Faiza

GenVisR : A tool for genomic visualization

The ever-increasing progress of sequencing techniques has developed a massive amount of…

Dr. Muniba Faiza

EVOBLAST: Evolutionary Fingerprinting Analysis Module

In continuation with the series under “Do you Hyphy...”, this article envisages…

Prashant Pant

Cytoscape.js : A graph library for network visualization and analysis

Network visualization has become a strong need for studying the molecular interactions…

Dr. Muniba Faiza

What is PRSice?

Etiology is the study of origination or causation of an event or…

Dr. Muniba Faiza

A practical guide to selection analyses of coding sequence datasets and its intricacies

This is the second article under the popular series “Do you HYPHY…”,…

Prashant Pant

MUSCLE v/s T-COFFEE : An overview and different aspects

As I have discussed in my earlier articles about the multiple sequence…

Dr. Muniba Faiza

TIN: R package to analyze Transcriptome Instability

Alternative Splicing plays a very essential role in proper functioning of eukaryotic…

Dr. Muniba Faiza

Roary: Analysis of Prokaryote Pan Genome on a large-scale

The Microbial Pan Genome is the union of genes shared by genomes…

Dr. Muniba Faiza

GenomeD3 plot : Easy visualization of genomes

As the needs say the importance of sequencing of genomes, it is…

Dr. Muniba Faiza

Installing Gromacs on Ubuntu for MD Simulation

In bioinformatics, GROMACS is one of the most popular Molecular Dynamics simulation…

Tariq Abdullah