In our previous article, we generated multiple conformers using OpenBabel. In this article, we are going to generate multiple low-energy conformers of a ligand using Avogadro...
OpenBabel [1] offers several functions including file format conversion, generation of 3D structures from smiles, and so on. In this article, we are going to generate...
Pyrx is a bioinformatics tool to perform virtual screening [1]. We previously provided an article on performing simple protein-ligand site-specific docking using Pyrx. In this article,...
A new assembler called SAUTE is developed for sequence assembly that is based on target enrichment [1].
Previously, we provided a tutorial on the installation of idock on Ubuntu (Linux). In this article, we are going to demonstrate the docking of a metal...
Mitochondrial-toxicity-related molecules lead to damaging effects on mitochondria and cause severe side effects. To keep track of such molecules a new database is created.
idock [1] is a multithreaded software based on Autodock Vina. It is a virtual screening tool for flexible ligand docking. It also supports 27 different chemical...
A new more efficient version of BLAST+ 2.12.o is available now [1]. This version provides more efficient multithreaded searches.
We have previously provided an article on the installation of the Raccoon2 plugin on Ubuntu. In this article, we are going to install Raccoon2 [1] on...
In one of our previously published articles, we demonstrated protein-protein docking using HADDOCK2.4 [1]. In this article, we are going to demonstrate the HADDOCK results analysis...
