Generating multiple low-energy conformers using Avogadro
In our previous article, we generated multiple conformers using OpenBabel. In this…
How to generate multiple conformers of a ligand using OpenBabel?
OpenBabel offers several functions including file format conversion, generation of 3D structures…
How to perform virtual screening using Pyrx?
Pyrx is a bioinformatics tool to perform virtual screening . We previously…
How to perform metal ion-protein docking using idock?
Previously, we provided a tutorial on the installation of idock on Ubuntu…
How to analyze HADDOCK results using Pymol script generated from PRODIGY?
In one of our previously published articles, we demonstrated protein-protein docking using…
Protein-protein docking using HADDOCK2.4 web server
HADDOCK2.4 web server (https://bianca.science.uu.nl/haddock2.4/) is used for protein-protein docking and their modeling.…
How to perform site-specific docking using Pyrx?
Pyrx is a virtual screening software that allows the docking of multiple…
Easy installation of some alignment software on Ubuntu (Linux) 18.04 & 20.04
There are commonly used alignment programs such as muscle, blast, clustalx, and…
Installing CDK (Chemistry Development Kit) on Ubuntu (Linux)
CDK stands for chemistry development kit . This is an open source…
How to make an impactful science presentation?
After your hard work, it is time to showcase your study and…
Easy installation of GROMACS on Ubuntu 18.04 & 20.04
We have provided several articles on GROMACS installation on Ubuntu including the…
How to create an index file in GROMACS for MD simulation?
MD simulation is a tricky technique if you don't understand what you…
A new long short-term memory method to predict the spread of covid19
As covid19 has posed a major threat to human health and the…
sminalog_analysis.py – A new Python script to fetch top binding affinities from SMINA log file
In one of our previous posts, we provided a Python script for…
How to install sdsorter on Ubuntu (Linux)?
sdsorter is a tool that helps in the easy manipulation of SDF…
Where to find Docking and MD simulation software?
Docking and simulation are two of the methods that are most widely…
Video Tutorial: How to use vs_analysis Python script for virtual screening result analysis of Autodock Vina?
This is a demonstration video of our previously mentioned Python script (vs_analysis.py)…
Basic bioinformatics concepts to learn for beginners
This article is for beginners who are stepping into the field of…
Installing RDPTools on Ubuntu (Linux)
RDP provides analysis tools called RDPTools. These tools are used to high-throughput…