H2V- A Database of Human Responsive Genes & Proteins for SARS & MERS
A new database of response genes and proteins in humans for SARS…
Video Tutorial: Pymol Basic Functions- Part II
This video tutorial is in continuation of our previous tutorial.
Tutorial: MD simulation output analysis of a complex using GROMACS
We have provided several tutorials on molecular dynamics (MD) simulation (please check…
How to install Cortex on Ubuntu?
Cortex is a user-friendly framework for genome analysis . It acquires less…
Installing TREE-PUZZLE on Ubuntu
TREE-PUZZLE is a software to reconstruct phylogenetic trees using the maximum likelihood…
How to submit MD simulation job on a cluster server using PBS script?
Molecular dynamics (MD) simulation is one of the most widely used methods…
How to Compress and Decompress FASTQ, SAM/BAM & VCF Files using genozip?
genozip is a tool for lossless compression of large files including VCF,…
AligNet- A New Protein-Protein Interaction Network Aligner
Protein-protein interactions (PPIs) are essential to study to understand the molecular functions…
Importance of Reasoning in Research
Research is considered complicated. As it involves reading multiple research articles and…
Method-1: Installing GROMACS on Ubuntu with CUDA GPU Support
GROMACS is one of the most popular software in bioinformatics for molecular…
What does the coordinates mean in docking?
Researchers working in the field of bioinformatics are well-aware of the word…
How to perform covalent docking using AutodockFR (ADFR)?
Docking is performed in different ways depending upon the requirements. In some…
Installing GROMOS96 on Ubuntu
GROMOS96 is a well-known software package used for biomolecular simulations . It…
How to search for a specific character in a file using Python?
In this article, a simple python script is provided that can be…
Installing MGLTools2 package (ADFR/AGFR/AutoSite) on Ubuntu
MGLTools2 package comes with three different tools for docking: ADFR, AGFR, and…
How to perform Flexible Docking using Autodock Vina?
Flexible docking is when some residues in the interacting bodies (receptor and…
How to Find Binding Pocket/ Binding Site for Docking?
Finding binding sites/pockets in a target protein is one of the important…
Careers in Bioinformatics and Computational Biology
Bioinformatics is an interesting field of research combining biological sciences and computer…
Aligning DNA reads against a local database using DIAMOND
DIAMOND is a program for high throughput pairwise alignment of DNA reads…
Nested SQL queries and aggregate functions for complex information retrieval from a database
In one of our previous articles, we have mentioned a few basic…