Software

A collection of published articles on different bioinformatics software.

Latest Software News

vcf2fhir- A New Tool to Convert VCF files into HL7 FHIR Format

A new utility is developed to convert variant calling format (VCF) files…

Tariq Abdullah

Installing Bismark on Ubuntu

Bismark is a bioinformatics tool to map bisulfite treated sequencing reads to…

Dr. Muniba Faiza

FiNGS- A New Software providing Filters for Next Generation Sequencing

We use somatic variant callers to detect mutations in cancer samples by…

Tariq Abdullah

NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences

It is necessary to detect highly variable regions in envelopes of viruses…

Tariq Abdullah

How to install ClustalW2 on Ubuntu?

Clustal packages are quite useful in multiple sequence alignments. Especially, when you…

Tariq Abdullah

Tutorial-II: Functional Divergence Analysis using DIVERGE 3.0 software

This is a continuation article of our previous post: Tutorial-I: Functional Divergence…

Dr. Muniba Faiza

Tutorial-I: Functional Divergence Analysis using DIVERGE 3.0 software

DIVERGE is a tool to detect functional divergence between member genes of…

Dr. Muniba Faiza

ped_drew: A New Tool for Pedigree Visualization

A new command-line and web tool are developed for easy visualization of…

Tariq Abdullah

How to install Cortex on Ubuntu?

Cortex is a user-friendly framework for genome analysis . It acquires less…

Dr. Muniba Faiza

Most widely used software for docking results image generation

Computational docking is an important technique in bioinformatics. The docking result interpretation…

Tariq Abdullah

Installing TREE-PUZZLE on Ubuntu

TREE-PUZZLE is a software to reconstruct phylogenetic trees using the maximum likelihood…

Dr. Muniba Faiza

Installing HMMER package on Ubuntu

HMMER tool is used for searching sequence homologs using profile hidden Markov…

Tariq Abdullah

How to Compress and Decompress FASTQ, SAM/BAM & VCF Files using genozip?

genozip is a tool for lossless compression of large files including VCF,…

Dr. Muniba Faiza

AligNet- A New Protein-Protein Interaction Network Aligner

Protein-protein interactions (PPIs) are essential to study to understand the molecular functions…

Dr. Muniba Faiza

GIANT: A New Tool for Transcriptomic Data Analysis

Transcriptomic data analysis is an important requirement in biomedical research. The bioinformatics…

Tariq Abdullah

Method-1: Installing GROMACS on Ubuntu with CUDA GPU Support

GROMACS is one of the most popular software in bioinformatics for molecular…

Dr. Muniba Faiza

Installing FASTX-toolkit on Ubuntu

FASTX-toolkit is a command-line bioinformatics software package for the preprocessing of short…

Tariq Abdullah

Installing GROMOS96 on Ubuntu

GROMOS96 is a well-known software package used for biomolecular simulations . It…

Dr. Muniba Faiza

Installing Pyrx on Ubuntu

Pyrx is a bioinformatics software that is used for the virtual screening…

Tariq Abdullah

Installing MGLTools2 package (ADFR/AGFR/AutoSite) on Ubuntu

MGLTools2 package comes with three different tools for docking: ADFR, AGFR, and…

Dr. Muniba Faiza