Tools

A collection of articles explaining installation and usage of different bioinformatics tools.

Latest Tools News

How to install AutoDock Vina on Ubuntu?

AutoDock Vina is one of the most popular software in Bioinformatics, known…

Dr. Muniba Faiza

Bioinformatics Challenges and Advances in RNA interference

    RNA interference is a post-transcriptional gene regulatory mechanism to down-regulate…

Recent advances in in-silico approaches for enzyme engineering

Enzymes are natural biocatalysts and an attractive alternative to chemicals providing improved…

Dr. Muniba Faiza

Lipidomics: An overview

Lipids are the essential metabolites in human body performing different functions such…

Dr. Muniba Faiza

A short introduction to protein structures modification and ModFinder

A lot of protein structures are determined on a large scale and…

Dr. Muniba Faiza

Alignment-free approaches for Sequence Analysis

Multiple Sequence Alignment (MSA) is a fundamental aspect of Bioinformatics in order…

Dr. Muniba Faiza

How to perform docking in a specific binding site using AutoDock Vina?

AutoDock Vina is a bioinformatics tool that is used to perform in-silico…

Dr. Muniba Faiza

Methods to detect the effects of alternative splicing and transcription on proteins

Alternative splicing and the transcription are the most familiar processes amongst the…

Dr. Muniba Faiza

PcircRNA_finder: Tool to predict circular RNA in plants

The non-coding circular RNAs (circRNA) play important role in controlling cellular processes.…

Dr. Muniba Faiza

Prediction of Protein-Protein Binding Affinity through their Amino Acid Sequence

Protein-protein interactions (PPIs) have become necessary in order to study many biological…

Dr. Muniba Faiza

miRNAs and their Target Prediction Tools: An Overview

miRNAs are the small endogenous non-coding RNAs having a length less than…

Dr. Muniba Faiza

DrugQuest: Tool for Drug-associated Queries

In this rising era of personalized medicine, drug discovery, data refining, chemical…

Dr. Muniba Faiza

Cytoscape.js : A graph library for network visualization and analysis

Network visualization has become a strong need for studying the molecular interactions…

Dr. Muniba Faiza

Foldalign: a tool for secondary structure alignment of RNA

Secondary structure formation and conformational changes play a key role in understanding…

Dr. Muniba Faiza

Predictive metagenomics profiling: why, what and how ?

What is predictive metagenomics profiling? Recently, predictive metagenomics profiling (PMP) has been…

Jennifer Wood

A practical guide to selection analyses of coding sequence datasets and its intricacies

This is the second article under the popular series “Do you HYPHY…”,…

Prashant Pant

WebFEATURE : Tool to identify and visualize Functional Sites in Macromolecules

The identification and assignment of functions of unknown macro molecules has been…

Dr. Muniba Faiza

MUSCLE v/s T-COFFEE : An overview and different aspects

As I have discussed in my earlier articles about the multiple sequence…

Dr. Muniba Faiza

T-Coffee : A tool that combines both local and global alignments

T-Coffee is a multiple sequence alignment tool which stands for Tree-based Consistency…

Dr. Muniba Faiza

Do you HYPHY with (Data)Monkey !!

HyPhy, acronym for Hypothesis Testing Using Phylogenies (www.hyphy.org) was written & designed…

Prashant Pant