DockingAnalyzer.py: A New Python script to Identify Ligand Binding in Protein Pockets.
High-throughput virtual screening (HTVS) is a pivotal technique in drug discovery that…
How to install the DockingPie plugin on PyMOL?
DockingPie is a plugin of PyMOL made to fulfill the purpose of…
Video Tutorial: Calculating binding pocket volume using PyVol plugin.
This is a video tutorial for calculating binding pocket volume using the…
How to calculate binding pocket volume using PyVol plugin in PyMol?
Previously, we provided a tutorial for PyVol plugin installation. In this article,…
How to generate electron density map using Pymol?
Electron density maps are available for most of the protein structures in…
Installing PyVOL plugin in Pymol on Ubuntu (Linux).
PyVOL is an excellent plugin of Pymol for pocket visualization of proteins.…
How to calculate center of mass of a protein structure using Python script?
Here is a Python script that helps you calculate the center of…
[Tutorial] Installing Pymol on Mac OS.
Previously, we provided a tutorial for Pymol installation on Ubuntu. In this…
PyMol: Uses & Applications
PyMol is one of the most widely used bioinformatics software. Generally, it…
How to save high resolution images in Pymol using command line?
Previously, we have provided a tutorial on saving good-quality images using Pymol…
How to save good quality images in Pymol GUI?
Pymol is a Python-based molecular viewer that is used for multiple purposes.…
Performing in silico mutagenesis using Pymol?
Pymol is a molecular viewer that is mostly used for visualization purposes.…
Tutorial: Basic Bioinformatics Software Installation on Ubuntu (Linux)
In this article, we are going to install some basic bioinformatics tools…
How to find disulfides in protein structure using Pymol?
As shown in previous articles, Pymol has several functions. In this article,…
How to build molecules in Pymol?
Pymol has many functions that you keep finding on exploration. In this…
Video Tutorial: Pymol Basic Functions- Part II
This video tutorial is in continuation of our previous tutorial.
Most widely used software for docking results image generation
Computational docking is an important technique in bioinformatics. The docking result interpretation…
Video Tutorial: Basic Functions of PyMol
Previously, we have shown how to analyze Vina output of docking in…
Plugin to visualize CASTp results in PyMOL
CASTp (Computed Atlas of Surface Topography of proteins) server is used to…