Identifying binding sites in receptors using AutoSite tool
AutoSite is a computational method and tool that is used for the…
SequelTools: A new suite for PacBio Sequel raw sequence data analysis
A new suite of tools called SequelTools has been developed for analyzing…
MAIRA: New Program for Metagenomic Sequencing Data Analysis
MAIRA is a new software for taxonomic and functional analysis of long…
Aligning DNA reads against a local database using DIAMOND
DIAMOND is a program for high throughput pairwise alignment of DNA reads…
Installing GalaxyPepDock & Galaxy-Server on Ubuntu
GalaxyPepDock is a software used for protein-peptide docking based on interaction similarity.…
Most widely used tools for RNA Secondary Structure Prediction
In this article, some software/tools are mentioned that are most widely used…
Tutorial: Constructing phylogenetic tree using MEGA7
MEGAX is a bioinformatics software/tool used for phylogenetic tree construction. In this…
Installing FragGeneScan on Ubuntu
FragGeneScan is a bioinformatics software to find fragmented genes in short reads…
Video Tutorial: Basic Functions of PyMol
Previously, we have shown how to analyze Vina output of docking in…
Installing MEME suite on Ubuntu
MEME suite is used to discover novel motifs in unaligned nucleotide and…
Installing BLAT- A Pairwise Alignment Tool on Ubuntu
BLAT is a pairwise sequence alignment algorithm that is used in the…
RNAIndel: A tool to identify somatic indels from tumor RNA-seq data
It is a challenging task to discover somatic coding indels that are…
Differential Gene Expression Analysis of RNA-Seq data using MeV
Differential gene expression analysis helps in discovering quantitative changes in the expression…
Installing CRISPRCasFinder on Ubuntu
CRISPR/Cas9 is a genome editing technology trending fastly. It is used to…
Tutorial: Installing Autodock Vina on Windows
We have provided several tutorials on Autodock Vina software including its installation…
Predict putative protein targets for small molecules using a new tool
It is computationally costly to predict target proteins for query compounds or…
Most widely used web servers/software for single-cell RNA-seq analysis
Gene expression in single cells is measured using single-cell RNA sequencing technology.…
Plugin to visualize CASTp results in PyMOL
CASTp (Computed Atlas of Surface Topography of proteins) server is used to…
Prepare receptor and ligand files for docking using Python scripts
Docking software such as Autodock4 and Autodock Vina require input receptor and…