vcf2fhir- A New Tool to Convert VCF files into HL7 FHIR Format
A new utility is developed to convert variant calling format (VCF) files…
Installing Bismark on Ubuntu
Bismark is a bioinformatics tool to map bisulfite treated sequencing reads to…
FiNGS- A New Software providing Filters for Next Generation Sequencing
We use somatic variant callers to detect mutations in cancer samples by…
NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences
It is necessary to detect highly variable regions in envelopes of viruses…
How to install ClustalW2 on Ubuntu?
Clustal packages are quite useful in multiple sequence alignments. Especially, when you…
Tutorial-I: Functional Divergence Analysis using DIVERGE 3.0 software
DIVERGE is a tool to detect functional divergence between member genes of…
Evaluate predicted protein distances using DISTEVAL
A new webserver called DISTEVAL is developed that evaluates the predicted protein…
How to find disulfides in protein structure using Pymol?
As shown in previous articles, Pymol has several functions. In this article,…
How to build molecules in Pymol?
Pymol has many functions that you keep finding on exploration. In this…
Video Tutorial: Pymol Basic Functions- Part II
This video tutorial is in continuation of our previous tutorial.
ped_drew: A New Tool for Pedigree Visualization
A new command-line and web tool are developed for easy visualization of…
Most widely used software for docking results image generation
Computational docking is an important technique in bioinformatics. The docking result interpretation…
Installing TREE-PUZZLE on Ubuntu
TREE-PUZZLE is a software to reconstruct phylogenetic trees using the maximum likelihood…
Installing HMMER package on Ubuntu
HMMER tool is used for searching sequence homologs using profile hidden Markov…
How to Compress and Decompress FASTQ, SAM/BAM & VCF Files using genozip?
genozip is a tool for lossless compression of large files including VCF,…
AligNet- A New Protein-Protein Interaction Network Aligner
Protein-protein interactions (PPIs) are essential to study to understand the molecular functions…
Installing FASTX-toolkit on Ubuntu
FASTX-toolkit is a command-line bioinformatics software package for the preprocessing of short…
Installing SIFT for Missense Variants on Ubuntu
SIFT is a bioinformatics tool for predicting missense effects of non-synonymous/missense variations…
smORFunction: A Tool for ORFs and Microproteins Function Prediction
small open reading frames (smORFs) that are less than 100 codons in…
Installing MGLTools2 package (ADFR/AGFR/AutoSite) on Ubuntu
MGLTools2 package comes with three different tools for docking: ADFR, AGFR, and…