Tools

A collection of articles explaining installation and usage of different bioinformatics tools.

Latest Tools News

Installing TopHat2 on Ubuntu

TopHat is one of the most widely used tools for RNA-seq reads…

Dr. Muniba Faiza

vcf2fhir- A New Tool to Convert VCF files into HL7 FHIR Format

A new utility is developed to convert variant calling format (VCF) files…

Tariq Abdullah

Installing Bismark on Ubuntu

Bismark is a bioinformatics tool to map bisulfite treated sequencing reads to…

Dr. Muniba Faiza

FiNGS- A New Software providing Filters for Next Generation Sequencing

We use somatic variant callers to detect mutations in cancer samples by…

Tariq Abdullah

NGlyAlign- A New Tool to Align Highly Variable Regions in HIV Sequences

It is necessary to detect highly variable regions in envelopes of viruses…

Tariq Abdullah

How to install ClustalW2 on Ubuntu?

Clustal packages are quite useful in multiple sequence alignments. Especially, when you…

Tariq Abdullah

Tutorial-I: Functional Divergence Analysis using DIVERGE 3.0 software

DIVERGE is a tool to detect functional divergence between member genes of…

Dr. Muniba Faiza

Evaluate predicted protein distances using DISTEVAL

A new webserver called DISTEVAL is developed that evaluates the predicted protein…

Dr. Muniba Faiza

How to find disulfides in protein structure using Pymol?

As shown in previous articles, Pymol has several functions. In this article,…

Tariq Abdullah

How to build molecules in Pymol?

Pymol has many functions that you keep finding on exploration. In this…

Tariq Abdullah

Video Tutorial: Pymol Basic Functions- Part II

This video tutorial is in continuation of our previous tutorial.

Dr. Muniba Faiza

ped_drew: A New Tool for Pedigree Visualization

A new command-line and web tool are developed for easy visualization of…

Tariq Abdullah

Most widely used software for docking results image generation

Computational docking is an important technique in bioinformatics. The docking result interpretation…

Tariq Abdullah

Installing TREE-PUZZLE on Ubuntu

TREE-PUZZLE is a software to reconstruct phylogenetic trees using the maximum likelihood…